Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.1□□□□□ -2.23
VPS13AQ96RL7 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.1□□□□□ -2.23
VPS13AQ96RL7 AC068700.1-201ENST00000565862 3754 ntBASIC1.1□□□□□ -2.23
VPS13AQ96RL7 MIR532-201ENST00000385025 91 ntBASIC1.1□□□□□ -2.23
VPS13AQ96RL7 AC007098.1-201ENST00000420122 367 ntBASIC1.1□□□□□ -2.23
VPS13AQ96RL7 HMGN2P20-201ENST00000437531 273 ntBASIC1.1□□□□□ -2.23
VPS13AQ96RL7 AC090096.1-201ENST00000489168 390 ntBASIC1.1□□□□□ -2.23
VPS13AQ96RL7 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.1□□□□□ -2.23
VPS13AQ96RL7 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.1□□□□□ -2.23
VPS13AQ96RL7 CR848007.2-201ENST00000424918 787 ntBASIC1.1□□□□□ -2.23
VPS13AQ96RL7 AC093752.1-206ENST00000511823 336 ntBASIC1.1□□□□□ -2.23
VPS13AQ96RL7 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.1□□□□□ -2.23
VPS13AQ96RL7 AL118496.1-201ENST00000440201 1812 ntBASIC1.09□□□□□ -2.23
VPS13AQ96RL7 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
VPS13AQ96RL7 SNORD114-23-201ENST00000363536 72 ntBASIC1.09□□□□□ -2.23
VPS13AQ96RL7 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC1.09□□□□□ -2.23
VPS13AQ96RL7 AC234064.1-201ENST00000436312 247 ntBASIC1.09□□□□□ -2.23
VPS13AQ96RL7 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.09□□□□□ -2.23
VPS13AQ96RL7 RPL30P6-201ENST00000475925 342 ntBASIC1.09□□□□□ -2.23
VPS13AQ96RL7 AC093281.2-201ENST00000510153 597 ntBASIC1.09□□□□□ -2.23
VPS13AQ96RL7 RNA5SP364-201ENST00000516938 78 ntBASIC1.09□□□□□ -2.23
VPS13AQ96RL7 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC1.09□□□□□ -2.23
VPS13AQ96RL7 AC018754.1-201ENST00000607486 925 ntBASIC1.09□□□□□ -2.23
VPS13AQ96RL7 MIR6513-201ENST00000621188 64 ntBASIC1.09□□□□□ -2.23
VPS13AQ96RL7 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.09□□□□□ -2.23
VPS13AQ96RL7 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.09□□□□□ -2.23
VPS13AQ96RL7 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.09□□□□□ -2.23
VPS13AQ96RL7 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.09□□□□□ -2.24
VPS13AQ96RL7 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
VPS13AQ96RL7 AC109780.2-201ENST00000413467 845 ntBASIC1.09□□□□□ -2.24
VPS13AQ96RL7 RPL37P25-201ENST00000507308 276 ntBASIC1.09□□□□□ -2.24
VPS13AQ96RL7 RNU11-2P-201ENST00000516898 142 ntBASIC1.09□□□□□ -2.24
VPS13AQ96RL7 OR4V1P-201ENST00000525394 1140 ntBASIC1.09□□□□□ -2.24
VPS13AQ96RL7 AL512605.2-201ENST00000592972 256 ntBASIC1.09□□□□□ -2.24
VPS13AQ96RL7 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC1.09□□□□□ -2.24
VPS13AQ96RL7 HMGB1P49-201ENST00000418882 569 ntBASIC1.08□□□□□ -2.24
VPS13AQ96RL7 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC1.08□□□□□ -2.24
VPS13AQ96RL7 AL596276.1-201ENST00000434465 418 ntBASIC1.08□□□□□ -2.24
VPS13AQ96RL7 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.08□□□□□ -2.24
VPS13AQ96RL7 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC1.08□□□□□ -2.24
VPS13AQ96RL7 AC113155.1-201ENST00000511141 769 ntBASIC1.08□□□□□ -2.24
VPS13AQ96RL7 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.08□□□□□ -2.24
VPS13AQ96RL7 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC1.08□□□□□ -2.24
VPS13AQ96RL7 AC074117.2-201ENST00000417130 397 ntBASIC1.08□□□□□ -2.24
VPS13AQ96RL7 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.08□□□□□ -2.24
VPS13AQ96RL7 IMMP1LP2-201ENST00000552954 492 ntBASIC1.08□□□□□ -2.24
VPS13AQ96RL7 BNIP3P7-201ENST00000605641 516 ntBASIC1.08□□□□□ -2.24
VPS13AQ96RL7 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
VPS13AQ96RL7 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC1.08□□□□□ -2.24
VPS13AQ96RL7 ICE2P2-201ENST00000483823 2787 ntBASIC1.08□□□□□ -2.24
VPS13AQ96RL7 SUMO2P12-201ENST00000405924 140 ntBASIC1.08□□□□□ -2.24
VPS13AQ96RL7 Z86062.1-201ENST00000406773 777 ntBASIC1.08□□□□□ -2.24
VPS13AQ96RL7 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC1.08□□□□□ -2.24
VPS13AQ96RL7 AC004941.2-201ENST00000427009 228 ntBASIC1.08□□□□□ -2.24
VPS13AQ96RL7 AC114786.4-201ENST00000508771 728 ntBASIC1.08□□□□□ -2.24
VPS13AQ96RL7 AC114797.1-201ENST00000514003 728 ntBASIC1.08□□□□□ -2.24
VPS13AQ96RL7 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.08□□□□□ -2.24
VPS13AQ96RL7 AP004607.1-201ENST00000524456 203 ntBASIC1.08□□□□□ -2.24
VPS13AQ96RL7 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC1.08□□□□□ -2.24
VPS13AQ96RL7 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.08□□□□□ -2.24
VPS13AQ96RL7 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
VPS13AQ96RL7 AL512504.1-201ENST00000415494 778 ntBASIC1.07□□□□□ -2.24
VPS13AQ96RL7 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC1.07□□□□□ -2.24
VPS13AQ96RL7 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC1.07□□□□□ -2.24
VPS13AQ96RL7 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.07□□□□□ -2.24
VPS13AQ96RL7 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC1.07□□□□□ -2.24
VPS13AQ96RL7 AC233266.2-201ENST00000567067 528 ntBASIC1.07□□□□□ -2.24
VPS13AQ96RL7 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC1.07□□□□□ -2.24
VPS13AQ96RL7 DPPA3P1-201ENST00000448050 469 ntBASIC1.07□□□□□ -2.24
VPS13AQ96RL7 OR5AQ1P-201ENST00000527596 927 ntBASIC1.07□□□□□ -2.24
VPS13AQ96RL7 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC1.07□□□□□ -2.24
VPS13AQ96RL7 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC1.07□□□□□ -2.24
VPS13AQ96RL7 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC1.07□□□□□ -2.24
VPS13AQ96RL7 MIR330-201ENST00000362196 94 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
VPS13AQ96RL7 RNU1-52P-201ENST00000384190 164 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 AL512661.1-201ENST00000434586 1253 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 SEM1P1-201ENST00000506694 209 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
VPS13AQ96RL7 MTND4P31-201ENST00000425607 1343 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 TATDN1P1-201ENST00000414123 891 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 RPL30P4-201ENST00000429309 333 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 SUMO1P4-201ENST00000429430 302 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 RPL21P131-201ENST00000497298 483 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC1.06□□□□□ -2.24
VPS13AQ96RL7 RNU6-56P-201ENST00000516986 93 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 AC103833.1-201ENST00000517442 172 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 ANP32BP3-201ENST00000559213 706 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.06□□□□□ -2.24
VPS13AQ96RL7 AC009229.3-201ENST00000608056 282 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 MIR924-201ENST00000638017 53 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
VPS13AQ96RL7 RNA5SP331-201ENST00000364986 107 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 Y_RNA.518-201ENST00000384552 113 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 TXNP7-201ENST00000406296 293 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC1.06□□□□□ -2.24
VPS13AQ96RL7 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC1.06□□□□□ -2.24
VPS13AQ96RL7 LRRC34P2-201ENST00000514850 553 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 AC011330.2-201ENST00000621680 635 ntBASIC1.06□□□□□ -2.24
VPS13AQ96RL7 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms