Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
ZNF540Q8NDQ6 AC092447.10-201ENST00000620607 1652 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 MTND4P13-201ENST00000402078 1023 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 AL356421.1-201ENST00000403255 413 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 SNORD88.1-201ENST00000408684 91 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 MTCO1P53-201ENST00000441633 699 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 RPL21P41-201ENST00000459863 264 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 RPL30P9-201ENST00000465586 330 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 RPL21P13-201ENST00000488305 481 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 AC022447.1-201ENST00000515358 464 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 HMGN2P15-201ENST00000585707 270 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 AC012493.2-201ENST00000595083 291 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 VN1R83P-201ENST00000595685 445 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 AC239868.4-201ENST00000608318 671 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 FTX_3.1-201ENST00000610451 147 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 AC069234.5-201ENST00000611056 416 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 AC135507.2-201ENST00000612443 309 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 AC099506.2-201ENST00000623074 221 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 AC019226.1-201ENST00000625666 515 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 DDX43P2-201ENST00000604753 1354 ntBASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
ZNF540Q8NDQ6 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 TXNP7-201ENST00000406296 293 ntBASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 RN7SKP140-201ENST00000411196 284 ntBASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 SEPT2P1-201ENST00000419651 180 ntBASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 DPPA3P1-201ENST00000448050 469 ntBASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 AC109925.1-201ENST00000478069 331 ntBASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 RPS3AP43-201ENST00000479743 781 ntBASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 RPL36AP51-201ENST00000487216 318 ntBASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 RN7SL20P-201ENST00000488827 297 ntBASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 AC024589.1-201ENST00000512207 263 ntBASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 DEFB131D-201ENST00000526803 184 ntBASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 MIR4325-201ENST00000583049 90 ntBASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 RNU4-5P-201ENST00000607255 135 ntBASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 AC010133.1-201ENST00000615809 842 ntBASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 MAPK10-266ENST00000641066 6555 ntBASIC2.81□□□□□ -1.96
ZNF540Q8NDQ6 AC010329.5-201ENST00000623497 2174 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AC011477.1-204ENST00000623416 1325 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 OR1S2-201ENST00000302592 978 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 FTLP6-201ENST00000355274 422 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 Y_RNA.111-201ENST00000363248 100 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 RNU6-343P-201ENST00000364709 104 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 MIR181B1-201ENST00000385240 110 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 SNORA48.5-201ENST00000391143 135 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 CCNG1P1-201ENST00000406783 885 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AL451054.2-201ENST00000420896 202 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 RPS15AP5-201ENST00000436276 388 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 MTND5P14-201ENST00000441481 1267 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AL162389.1-201ENST00000449233 177 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AL160314.1-201ENST00000490836 438 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 RNU6-276P-201ENST00000516114 96 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 SCARNA13-201ENST00000516672 275 ntBASIC2.8□□□□□ -1.96
ZNF540Q8NDQ6 Y_RNA.717-201ENST00000517106 92 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 152 ms