Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 RPS4XP5-202ENST00000449995 1334 ntBASIC3.93□□□□□ -1.78
CLRN3Q8NCR9 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CLRN3Q8NCR9 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 Y_RNA.58-201ENST00000362807 102 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 Y_RNA.154-201ENST00000363624 102 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 RN7SKP171-201ENST00000364417 303 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 RNY3P1-201ENST00000365085 102 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 RNY3-201ENST00000365484 102 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 SNORA75B-201ENST00000384053 137 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 Y_RNA.490-201ENST00000384413 102 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 SNORA1.3-201ENST00000384676 136 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 SNORA40C-201ENST00000391285 128 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 OR4K12P-201ENST00000406538 961 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 RPS15AP6-201ENST00000420703 385 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 MTCO2P27-201ENST00000420740 428 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AC098614.2-201ENST00000426040 255 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 RPL21P91-201ENST00000429231 479 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AL158071.1-201ENST00000430315 461 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AC023141.3-201ENST00000436698 278 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 RPL31P15-201ENST00000449770 338 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 HLA-DPA3-207ENST00000454398 229 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 DHFRP3-201ENST00000455595 559 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 RN7SL441P-201ENST00000492388 296 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 RPS27P27-201ENST00000498779 255 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 RN7SKP24-201ENST00000515888 284 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 RNU1-86P-201ENST00000516108 154 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 RNU6-559P-201ENST00000516151 98 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 RNU1-107P-201ENST00000516617 154 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 MIR2114-201ENST00000516645 80 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 SNORA31.19-201ENST00000517079 126 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AC025423.5-201ENST00000550230 219 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 SYF2P1-201ENST00000550658 413 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AC026371.1-201ENST00000551867 419 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 HMGB1P14-201ENST00000557424 591 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AC044792.1-201ENST00000593294 196 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 NUTF2P8-201ENST00000604593 363 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AC007938.3-201ENST00000604965 623 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AC110741.2-201ENST00000605278 268 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AL050343.2-201ENST00000607338 280 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 MIR6793-201ENST00000612376 63 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AL160413.1-201ENST00000622780 310 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AC019278.1-201ENST00000623516 479 ntBASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC3.92□□□□□ -1.78
CLRN3Q8NCR9 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 FTLP6-201ENST00000355274 422 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 SNORD14B-201ENST00000364533 90 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 RNU6-593P-201ENST00000364716 112 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 MIR34A-201ENST00000385130 110 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 AL138878.1-201ENST00000405131 347 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 OR2AM1P-201ENST00000422137 422 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 UBE2V1P4-201ENST00000425374 344 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 AC007560.1-201ENST00000426912 237 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 RPS29P14-201ENST00000431518 171 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 RPS3AP52-201ENST00000435639 297 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 AL078601.1-201ENST00000444542 271 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 PPIA-203ENST00000451562 544 ntTSL 2 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 RNA5SP310-201ENST00000459084 116 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 RPL9P32-201ENST00000464118 620 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 CBX1-205ENST00000495350 550 ntTSL 2 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 RNU6-572P-201ENST00000516724 80 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 AC008627.1-201ENST00000517511 1704 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 CDH12P4-201ENST00000517835 295 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 CDH12P3-201ENST00000517935 295 ntBASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC3.91□□□□□ -1.78
CLRN3Q8NCR9 CDH12P1-201ENST00000518435 295 ntBASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms