Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 AP000857.1-201ENST00000532151 543 ntBASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 AL133153.1-201ENST00000557756 303 ntBASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 AMZ2P1-203ENST00000565833 850 ntBASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 MIR4429-201ENST00000580105 73 ntBASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 AC010620.1-201ENST00000601088 1102 ntBASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 U73023.1-201ENST00000603134 700 ntBASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 OR2AS2P-201ENST00000606902 342 ntBASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 AC007038.2-201ENST00000608095 740 ntBASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 AC097065.2-201ENST00000608159 533 ntBASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 MIR6075-201ENST00000620782 95 ntBASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 AC026422.1-201ENST00000623961 452 ntBASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 AC025048.6-202ENST00000627667 438 ntBASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 AL392088.2-201ENST00000637607 285 ntBASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
NUP54Q7Z3B4 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.89
NUP54Q7Z3B4 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 RNA5SP119-201ENST00000362715 117 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 RNU6-198P-201ENST00000384258 104 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 MIR514A1-201ENST00000385133 98 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 SNORA11-201ENST00000408789 128 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 Y_RNA.608-201ENST00000410647 95 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AC018630.2-202ENST00000422992 927 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 SAR1AP4-201ENST00000429225 591 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 MTND2P22-201ENST00000444325 1033 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 COX6CP2-201ENST00000444980 225 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AL162389.1-201ENST00000449233 177 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AL590365.1-201ENST00000450788 243 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 RNU7-59P-201ENST00000459101 61 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 FCF1P3-201ENST00000496394 590 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AC093534.1-201ENST00000504977 132 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 FABP5P5-201ENST00000515537 406 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 DUXAP2-201ENST00000519198 589 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 ZNF519P3-201ENST00000557158 1032 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AL356432.3-201ENST00000568952 465 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 MIR3922-201ENST00000585192 84 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AL359999.1-201ENST00000604513 294 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AC138749.5-201ENST00000611461 208 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AC116165.2-201ENST00000616705 206 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AC009159.1-201ENST00000618386 642 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AL603758.1-201ENST00000618654 241 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AL357559.1-201ENST00000622228 274 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 AL049781.1-201ENST00000623195 3585 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 ZNF519P1-201ENST00000449011 1626 ntBASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
NUP54Q7Z3B4 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 RNU1-105P-201ENST00000363470 161 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 RNA5SP50-201ENST00000363731 107 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 RNU5A-8P-201ENST00000364102 114 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 RNU4-91P-201ENST00000364778 135 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 SNORA23-201ENST00000365128 182 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 MIR23B-201ENST00000384832 97 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AL109755.1-201ENST00000401791 649 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 RN7SKP285-201ENST00000410137 318 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AL645937.1-202ENST00000421799 937 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 HMGN2P30-201ENST00000423237 256 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 BX890604.2-201ENST00000427883 474 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 ATP5JP1-201ENST00000431631 322 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC009961.3-201ENST00000449832 765 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 USP9YP12-201ENST00000450481 570 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 RPL23AP67-201ENST00000465341 474 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 MTND4LP3-201ENST00000468320 276 ntBASIC3.2□□□□□ -1.9
NUP54Q7Z3B4 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms