Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
USP54Q70EL1 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
USP54Q70EL1 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
USP54Q70EL1 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC1.94□□□□□ -2.1
USP54Q70EL1 MTCO3P4-201ENST00000419236 787 ntBASIC1.94□□□□□ -2.1
USP54Q70EL1 LSM1P1-201ENST00000438629 273 ntBASIC1.94□□□□□ -2.1
USP54Q70EL1 RPS23P3-201ENST00000470993 430 ntBASIC1.94□□□□□ -2.1
USP54Q70EL1 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC1.94□□□□□ -2.1
USP54Q70EL1 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC1.94□□□□□ -2.1
USP54Q70EL1 SEPT7P9-203ENST00000604116 343 ntBASIC1.94□□□□□ -2.1
USP54Q70EL1 HMGB1P51-201ENST00000605166 638 ntBASIC1.94□□□□□ -2.1
USP54Q70EL1 AC008962.1-201ENST00000605729 304 ntBASIC1.94□□□□□ -2.1
USP54Q70EL1 AC112503.2-201ENST00000609005 552 ntBASIC1.94□□□□□ -2.1
USP54Q70EL1 AC008083.4-201ENST00000615076 444 ntBASIC1.94□□□□□ -2.1
USP54Q70EL1 AC006963.1-201ENST00000624003 1052 ntBASIC1.94□□□□□ -2.1
USP54Q70EL1 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
USP54Q70EL1 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
USP54Q70EL1 SNORA67.6-201ENST00000391093 99 ntBASIC1.93□□□□□ -2.1
USP54Q70EL1 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
USP54Q70EL1 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC1.93□□□□□ -2.1
USP54Q70EL1 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC1.93□□□□□ -2.1
USP54Q70EL1 SNORA31.8-201ENST00000516327 108 ntBASIC1.93□□□□□ -2.1
USP54Q70EL1 AC025755.1-201ENST00000521306 278 ntBASIC1.93□□□□□ -2.1
USP54Q70EL1 AP004371.1-201ENST00000525240 214 ntBASIC1.93□□□□□ -2.1
USP54Q70EL1 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.93□□□□□ -2.1
USP54Q70EL1 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.93□□□□□ -2.1
USP54Q70EL1 AC107954.1-201ENST00000565906 727 ntBASIC1.93□□□□□ -2.1
USP54Q70EL1 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.93□□□□□ -2.1
USP54Q70EL1 MIR6767-201ENST00000637302 66 ntBASIC1.93□□□□□ -2.1
USP54Q70EL1 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.93□□□□□ -2.1
USP54Q70EL1 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
USP54Q70EL1 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
USP54Q70EL1 ZNF37BP-203ENST00000452306 1352 ntBASIC1.93□□□□□ -2.1
USP54Q70EL1 HMGN2P30-201ENST00000423237 256 ntBASIC1.93□□□□□ -2.1
USP54Q70EL1 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC1.93□□□□□ -2.1
USP54Q70EL1 AC090774.1-201ENST00000435925 246 ntBASIC1.93□□□□□ -2.1
USP54Q70EL1 GTF2IP7-202ENST00000436677 309 ntBASIC1.93□□□□□ -2.1
USP54Q70EL1 TPTE2P6-202ENST00000445572 1007 ntBASIC1.93□□□□□ -2.1
USP54Q70EL1 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC1.93□□□□□ -2.1
USP54Q70EL1 MTCYBP18-201ENST00000501056 747 ntBASIC1.93□□□□□ -2.1
USP54Q70EL1 ATP5EP1-201ENST00000510257 156 ntBASIC1.93□□□□□ -2.1
USP54Q70EL1 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC1.93□□□□□ -2.1
USP54Q70EL1 AC008494.2-201ENST00000514544 370 ntBASIC1.93□□□□□ -2.1
USP54Q70EL1 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC1.93□□□□□ -2.1
USP54Q70EL1 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.93□□□□□ -2.1
USP54Q70EL1 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC1.93□□□□□ -2.1
USP54Q70EL1 MIR5194-201ENST00000582634 120 ntBASIC1.93□□□□□ -2.1
USP54Q70EL1 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC1.93□□□□□ -2.1
USP54Q70EL1 OR4G1P-201ENST00000588632 938 ntBASIC1.93□□□□□ -2.1
USP54Q70EL1 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
USP54Q70EL1 MIR6076-201ENST00000617521 113 ntBASIC1.93□□□□□ -2.1
USP54Q70EL1 ZNF209P-201ENST00000593450 2304 ntBASIC1.92□□□□□ -2.1
USP54Q70EL1 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.92□□□□□ -2.1
USP54Q70EL1 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
USP54Q70EL1 RNU1-93P-201ENST00000364704 169 ntBASIC1.92□□□□□ -2.1
USP54Q70EL1 TRAPPC13P1-201ENST00000435991 1062 ntBASIC1.92□□□□□ -2.1
USP54Q70EL1 UBE2V1P5-201ENST00000440070 405 ntBASIC1.92□□□□□ -2.1
USP54Q70EL1 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC1.92□□□□□ -2.1
USP54Q70EL1 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.92□□□□□ -2.1
USP54Q70EL1 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.92□□□□□ -2.1
USP54Q70EL1 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC1.92□□□□□ -2.1
USP54Q70EL1 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC1.92□□□□□ -2.1
USP54Q70EL1 HMGB1P22-201ENST00000505315 124 ntBASIC1.92□□□□□ -2.1
USP54Q70EL1 AC009901.1-201ENST00000506703 541 ntBASIC1.92□□□□□ -2.1
USP54Q70EL1 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.92□□□□□ -2.1
USP54Q70EL1 OR5AQ1P-201ENST00000527596 927 ntBASIC1.92□□□□□ -2.1
USP54Q70EL1 AP002748.2-201ENST00000528671 348 ntBASIC1.92□□□□□ -2.1
USP54Q70EL1 AP005435.4-201ENST00000529514 284 ntBASIC1.92□□□□□ -2.1
USP54Q70EL1 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.92□□□□□ -2.1
USP54Q70EL1 TRAV28-201ENST00000557548 323 ntBASIC1.92□□□□□ -2.1
USP54Q70EL1 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.92□□□□□ -2.1
USP54Q70EL1 MIR6840-201ENST00000611937 71 ntBASIC1.92□□□□□ -2.1
USP54Q70EL1 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC1.92□□□□□ -2.1
USP54Q70EL1 PVT1_3.1-201ENST00000620853 95 ntBASIC1.92□□□□□ -2.1
USP54Q70EL1 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.92□□□□□ -2.1
USP54Q70EL1 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
USP54Q70EL1 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.91□□□□□ -2.1
USP54Q70EL1 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.91□□□□□ -2.1
USP54Q70EL1 MIR613-201ENST00000385248 95 ntBASIC1.91□□□□□ -2.1
USP54Q70EL1 MIR320A-201ENST00000385302 82 ntBASIC1.91□□□□□ -2.1
USP54Q70EL1 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC1.91□□□□□ -2.1
USP54Q70EL1 RPS6P14-201ENST00000425165 719 ntBASIC1.91□□□□□ -2.1
USP54Q70EL1 MORF4L1P7-201ENST00000426038 703 ntBASIC1.91□□□□□ -2.1
USP54Q70EL1 AL365400.1-201ENST00000431854 640 ntBASIC1.91□□□□□ -2.1
USP54Q70EL1 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC1.91□□□□□ -2.1
USP54Q70EL1 Z96811.1-201ENST00000445880 108 ntBASIC1.91□□□□□ -2.1
USP54Q70EL1 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.91□□□□□ -2.1
USP54Q70EL1 AC117525.1-201ENST00000515228 503 ntBASIC1.91□□□□□ -2.1
USP54Q70EL1 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.91□□□□□ -2.1
USP54Q70EL1 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.91□□□□□ -2.1
USP54Q70EL1 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC1.91□□□□□ -2.1
USP54Q70EL1 AL133507.1-201ENST00000605269 557 ntBASIC1.91□□□□□ -2.1
USP54Q70EL1 HSPE1P14-201ENST00000605812 302 ntBASIC1.91□□□□□ -2.1
USP54Q70EL1 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC1.91□□□□□ -2.1
USP54Q70EL1 AL355810.1-201ENST00000614629 552 ntBASIC1.91□□□□□ -2.1
USP54Q70EL1 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC1.91□□□□□ -2.1
USP54Q70EL1 AC116618.1-201ENST00000634617 774 ntBASIC1.91□□□□□ -2.1
USP54Q70EL1 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC1.91□□□□□ -2.1
USP54Q70EL1 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
USP54Q70EL1 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms