Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 AC105914.1-201ENST00000511798 226 ntBASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 RNA5SP364-201ENST00000516938 78 ntBASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 MTND5P35-201ENST00000557537 1720 ntBASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 AC009268.1-201ENST00000561352 1203 ntBASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 AC138915.1-201ENST00000565427 1685 ntBASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 MIR4421-201ENST00000578133 69 ntBASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 AC004775.1-201ENST00000607389 753 ntBASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 AC008083.4-201ENST00000615076 444 ntBASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 MIR6515-201ENST00000619843 57 ntBASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 AL356118.1-201ENST00000635272 1078 ntBASIC2.08□□□□□ -2.08
CCDC88AQ3V6T2 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 RNU6-837P-201ENST00000391056 108 ntBASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 MCTS2P-201ENST00000394552 546 ntBASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 TAF9BP2-201ENST00000400856 499 ntBASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 RNU6-1077P-201ENST00000410506 102 ntBASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AF131216.2-201ENST00000512316 564 ntBASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC098848.2-201ENST00000588023 330 ntBASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC010738.1-201ENST00000604970 987 ntBASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 RNU6-1243P-201ENST00000364028 107 ntBASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AL356057.2-201ENST00000403318 432 ntBASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 ZNF92P1Y-201ENST00000415010 1191 ntBASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 RPL7P30-201ENST00000420888 709 ntBASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC135721.1-201ENST00000497954 479 ntBASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC021851.1-201ENST00000608537 1082 ntBASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AL590282.1-201ENST00000610379 1136 ntBASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
CCDC88AQ3V6T2 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 MIR144-201ENST00000384886 86 ntBASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 MTND2P21-201ENST00000436242 1042 ntBASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 RPS20P24-201ENST00000457473 361 ntBASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 KLRA1P-201ENST00000503499 986 ntBASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 AC016065.2-201ENST00000514530 444 ntBASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 AC083923.1-201ENST00000523708 376 ntBASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 AL157834.3-201ENST00000615543 103 ntBASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 AC007275.1-201ENST00000621243 671 ntBASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 AC068620.4-201ENST00000636730 1182 ntBASIC2.06□□□□□ -2.08
CCDC88AQ3V6T2 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 HSPE1P11-201ENST00000339579 310 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 SNORA14A-201ENST00000364773 135 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 RNU6-1027P-201ENST00000383998 107 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 SLC9B1P2-201ENST00000398120 1184 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 UBE2V2P3-201ENST00000433562 437 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 USP9YP15-201ENST00000442391 422 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 MTCO1P47-201ENST00000523889 1271 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 AC121758.2-201ENST00000553271 193 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 MIR5694-201ENST00000581190 76 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 STMN1P1-201ENST00000617809 440 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 SNHG22-203ENST00000617833 660 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 AC135776.4-201ENST00000624300 1904 ntBASIC2.05□□□□□ -2.08
CCDC88AQ3V6T2 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms