Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 Y_RNA.540-201ENST00000384638 111 ntBASIC1.63□□□□□ -2.15
CHD3Q12873 AL021407.1-201ENST00000404531 386 ntBASIC1.63□□□□□ -2.15
CHD3Q12873 RNU6-712P-201ENST00000410558 100 ntBASIC1.63□□□□□ -2.15
CHD3Q12873 RPL17P12-201ENST00000413391 526 ntBASIC1.63□□□□□ -2.15
CHD3Q12873 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC1.63□□□□□ -2.15
CHD3Q12873 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.63□□□□□ -2.15
CHD3Q12873 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC1.63□□□□□ -2.15
CHD3Q12873 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC1.63□□□□□ -2.15
CHD3Q12873 AC068135.1-201ENST00000446164 246 ntBASIC1.63□□□□□ -2.15
CHD3Q12873 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.63□□□□□ -2.15
CHD3Q12873 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC1.63□□□□□ -2.15
CHD3Q12873 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC1.63□□□□□ -2.15
CHD3Q12873 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC1.63□□□□□ -2.15
CHD3Q12873 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC1.63□□□□□ -2.15
CHD3Q12873 AC022662.1-201ENST00000580252 331 ntBASIC1.63□□□□□ -2.15
CHD3Q12873 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC1.63□□□□□ -2.15
CHD3Q12873 AL009028.1-201ENST00000604895 802 ntBASIC1.63□□□□□ -2.15
CHD3Q12873 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC1.63□□□□□ -2.15
CHD3Q12873 AC068620.4-201ENST00000636730 1182 ntBASIC1.63□□□□□ -2.15
CHD3Q12873 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
CHD3Q12873 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.63□□□□□ -2.15
CHD3Q12873 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC1.63□□□□□ -2.15
CHD3Q12873 RNU2-68P-201ENST00000410878 191 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.62□□□□□ -2.15
CHD3Q12873 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC1.62□□□□□ -2.15
CHD3Q12873 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC1.62□□□□□ -2.15
CHD3Q12873 AC092473.1-201ENST00000441098 221 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC1.62□□□□□ -2.15
CHD3Q12873 AL163540.1-201ENST00000485382 386 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC1.62□□□□□ -2.15
CHD3Q12873 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC1.62□□□□□ -2.15
CHD3Q12873 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC1.62□□□□□ -2.15
CHD3Q12873 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC1.62□□□□□ -2.15
CHD3Q12873 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC1.62□□□□□ -2.15
CHD3Q12873 MTCO1P40-201ENST00000574371 625 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 MIR4303-201ENST00000581299 66 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 AC090897.2-201ENST00000581715 130 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 AP001542.2-201ENST00000593141 364 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC1.62□□□□□ -2.15
CHD3Q12873 AL109659.3-201ENST00000624985 950 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 MTCO1P6-201ENST00000481192 1384 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC1.62□□□□□ -2.15
CHD3Q12873 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
CHD3Q12873 Y_RNA.122-201ENST00000363331 96 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 RNA5SP190-201ENST00000365222 118 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC1.62□□□□□ -2.15
CHD3Q12873 RNU6-821P-201ENST00000390995 107 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 RNA5SP252-201ENST00000391131 119 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.62□□□□□ -2.15
CHD3Q12873 AL133384.1-201ENST00000412744 351 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC1.62□□□□□ -2.15
CHD3Q12873 ZNF736P6Y-201ENST00000447526 1213 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.62□□□□□ -2.15
CHD3Q12873 AC090453.1-201ENST00000495560 436 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 RNA5SP490-201ENST00000517141 136 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 PTK2-220ENST00000520151 573 ntTSL 4 BASIC1.62□□□□□ -2.15
CHD3Q12873 AC090616.3-201ENST00000582184 217 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 MIR3616-201ENST00000584070 92 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 uc_338.20-201ENST00000621563 178 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 LINC00216-201ENST00000623548 1126 ntBASIC1.62□□□□□ -2.15
CHD3Q12873 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.62□□□□□ -2.15
CHD3Q12873 RNU1-52P-201ENST00000384190 164 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 Z86062.1-201ENST00000406773 777 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 UBE2V1P9-201ENST00000414760 368 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.61□□□□□ -2.15
CHD3Q12873 RPL7P37-201ENST00000425095 738 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC1.61□□□□□ -2.15
CHD3Q12873 OFD1P12Y-201ENST00000427963 1207 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 OFD1P13Y-201ENST00000431179 1232 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 OR4K11P-201ENST00000431829 904 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC1.61□□□□□ -2.15
CHD3Q12873 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC1.61□□□□□ -2.15
CHD3Q12873 GPM6BP3-201ENST00000442797 145 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC1.61□□□□□ -2.15
CHD3Q12873 AC092685.1-201ENST00000447960 1243 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 RNA5SP233-201ENST00000459153 113 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CHD3Q12873 RPL23AP63-201ENST00000498752 471 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 AC087272.1-201ENST00000523624 533 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 CIR1P1-201ENST00000524055 1133 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC1.61□□□□□ -2.15
CHD3Q12873 AC084033.1-201ENST00000550830 633 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC1.61□□□□□ -2.15
CHD3Q12873 RPAP2P1-201ENST00000603626 1168 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
CHD3Q12873 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
CHD3Q12873 RNU6-730P-201ENST00000383954 104 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 MIR493-201ENST00000385254 89 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 AC019129.1-201ENST00000403786 261 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 PRRC2CP1-201ENST00000404428 159 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 ARL2BPP3-201ENST00000421226 480 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 TMEM167AP1-201ENST00000423409 219 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.61□□□□□ -2.15
CHD3Q12873 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.61□□□□□ -2.15
CHD3Q12873 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC1.61□□□□□ -2.15
CHD3Q12873 RNU6-760P-201ENST00000516078 97 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 RNA5SP480-201ENST00000516840 109 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 RNA5SP471-201ENST00000516971 106 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 C1DP5-201ENST00000525775 383 ntBASIC1.61□□□□□ -2.15
CHD3Q12873 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 163.5 ms