Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 UBE2V2P1-201ENST00000434717 398 ntBASIC0.8□□□□□ -2.28
HSPG2P98160 AC098583.1-201ENST00000480875 255 ntBASIC0.8□□□□□ -2.28
HSPG2P98160 RPS27AP10-201ENST00000496103 208 ntBASIC0.8□□□□□ -2.28
HSPG2P98160 AL109653.1-201ENST00000603091 248 ntBASIC0.8□□□□□ -2.28
HSPG2P98160 AC090425.2-201ENST00000608818 501 ntBASIC0.8□□□□□ -2.28
HSPG2P98160 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC0.8□□□□□ -2.28
HSPG2P98160 RNU1-101P-201ENST00000391171 127 ntBASIC0.8□□□□□ -2.28
HSPG2P98160 AC243772.1-201ENST00000451620 410 ntBASIC0.8□□□□□ -2.28
HSPG2P98160 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC0.8□□□□□ -2.28
HSPG2P98160 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC0.8□□□□□ -2.28
HSPG2P98160 AP004607.1-201ENST00000524456 203 ntBASIC0.8□□□□□ -2.28
HSPG2P98160 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
HSPG2P98160 DUXAP5-201ENST00000529668 529 ntBASIC0.8□□□□□ -2.28
HSPG2P98160 AC007375.1-201ENST00000554513 578 ntBASIC0.8□□□□□ -2.28
HSPG2P98160 SNORA18.2-201ENST00000383865 132 ntBASIC0.8□□□□□ -2.28
HSPG2P98160 MIR1304-201ENST00000408243 91 ntBASIC0.8□□□□□ -2.28
HSPG2P98160 Z75741.2-201ENST00000417272 1167 ntBASIC0.8□□□□□ -2.28
HSPG2P98160 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC0.8□□□□□ -2.28
HSPG2P98160 RPL31P35-201ENST00000431058 377 ntBASIC0.8□□□□□ -2.28
HSPG2P98160 BMI1P1-201ENST00000445879 941 ntBASIC0.8□□□□□ -2.28
HSPG2P98160 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC0.8□□□□□ -2.28
HSPG2P98160 RNU1-40P-201ENST00000516816 164 ntBASIC0.8□□□□□ -2.28
HSPG2P98160 RNU1-97P-201ENST00000516872 164 ntBASIC0.8□□□□□ -2.28
HSPG2P98160 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC0.8□□□□□ -2.28
HSPG2P98160 AL161722.3-201ENST00000605789 2983 ntBASIC0.79□□□□□ -2.28
HSPG2P98160 AP000560.1-201ENST00000624150 1937 ntBASIC0.79□□□□□ -2.28
HSPG2P98160 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC0.79□□□□□ -2.28
HSPG2P98160 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.79□□□□□ -2.28
HSPG2P98160 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC0.79□□□□□ -2.28
HSPG2P98160 DNAJC8P1-201ENST00000554535 372 ntBASIC0.79□□□□□ -2.28
HSPG2P98160 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC0.79□□□□□ -2.28
HSPG2P98160 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC0.79□□□□□ -2.28
HSPG2P98160 AC011477.1-204ENST00000623416 1325 ntBASIC0.79□□□□□ -2.28
HSPG2P98160 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
HSPG2P98160 RNU1-148P-201ENST00000384472 162 ntBASIC0.79□□□□□ -2.28
HSPG2P98160 RN7SKP200-201ENST00000410564 320 ntBASIC0.79□□□□□ -2.28
HSPG2P98160 RPS12P24-201ENST00000412619 387 ntBASIC0.79□□□□□ -2.28
HSPG2P98160 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC0.79□□□□□ -2.28
HSPG2P98160 SNORD121B-201ENST00000458838 81 ntBASIC0.79□□□□□ -2.28
HSPG2P98160 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC0.79□□□□□ -2.28
HSPG2P98160 AC025755.1-201ENST00000521306 278 ntBASIC0.79□□□□□ -2.28
HSPG2P98160 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC0.79□□□□□ -2.28
HSPG2P98160 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC0.79□□□□□ -2.28
HSPG2P98160 DUXAP4-201ENST00000603046 613 ntBASIC0.79□□□□□ -2.28
HSPG2P98160 AC010487.4-201ENST00000637027 61 ntBASIC0.79□□□□□ -2.28
HSPG2P98160 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC0.79□□□□□ -2.28
HSPG2P98160 RNU1-109P-201ENST00000383960 147 ntBASIC0.79□□□□□ -2.28
HSPG2P98160 Y_RNA.471-201ENST00000384312 102 ntBASIC0.79□□□□□ -2.28
HSPG2P98160 AL596276.1-201ENST00000434465 418 ntBASIC0.79□□□□□ -2.28
HSPG2P98160 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC0.79□□□□□ -2.28
HSPG2P98160 RPL7P31-201ENST00000450192 724 ntBASIC0.79□□□□□ -2.28
HSPG2P98160 RPL31P41-201ENST00000477967 372 ntBASIC0.79□□□□□ -2.28
HSPG2P98160 AC139103.1-201ENST00000534696 1030 ntBASIC0.79□□□□□ -2.28
HSPG2P98160 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC0.79□□□□□ -2.28
HSPG2P98160 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC0.79□□□□□ -2.28
HSPG2P98160 AL589743.1-201ENST00000551932 2712 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 MIR524-201ENST00000385242 87 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC0.78□□□□□ -2.28
HSPG2P98160 SNRPFP3-201ENST00000457792 225 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 AC023790.1-201ENST00000482174 347 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 RPS23P4-201ENST00000487908 423 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 AC090821.2-201ENST00000523552 176 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC0.78□□□□□ -2.28
HSPG2P98160 AL121917.1-203ENST00000605534 577 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 AC244636.1-201ENST00000421152 228 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 AC098934.3-201ENST00000430450 190 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 Y_RNA.675-201ENST00000516389 149 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 NPM1P52-201ENST00000518264 846 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC0.78□□□□□ -2.28
HSPG2P98160 MIR4458-201ENST00000578872 75 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 AC005156.1-201ENST00000613371 573 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 RNA5SP354-201ENST00000391247 136 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 AL358176.2-201ENST00000425769 204 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.78□□□□□ -2.28
HSPG2P98160 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC0.78□□□□□ -2.28
HSPG2P98160 AC092902.1-201ENST00000486999 259 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 PRELID3BP4-201ENST00000515476 571 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC0.78□□□□□ -2.28
HSPG2P98160 uc_338.12-201ENST00000616344 181 ntBASIC0.78□□□□□ -2.28
HSPG2P98160 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC0.78□□□□□ -2.28
HSPG2P98160 Y_RNA.303-201ENST00000364998 94 ntBASIC0.78□□□□□ -2.29
HSPG2P98160 VN1R108P-201ENST00000431580 830 ntBASIC0.78□□□□□ -2.29
HSPG2P98160 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC0.78□□□□□ -2.29
HSPG2P98160 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC0.78□□□□□ -2.29
HSPG2P98160 SNORD108-201ENST00000459332 71 ntBASIC0.78□□□□□ -2.29
HSPG2P98160 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC0.78□□□□□ -2.29
HSPG2P98160 AC036111.3-201ENST00000526389 112 ntBASIC0.78□□□□□ -2.29
HSPG2P98160 MIR3973-201ENST00000579824 107 ntBASIC0.78□□□□□ -2.29
HSPG2P98160 AC013553.2-201ENST00000604244 589 ntBASIC0.78□□□□□ -2.29
HSPG2P98160 AL590099.1-201ENST00000615276 138 ntBASIC0.78□□□□□ -2.29
HSPG2P98160 CFTRP2-201ENST00000634304 199 ntBASIC0.78□□□□□ -2.29
HSPG2P98160 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC0.77□□□□□ -2.29
HSPG2P98160 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC0.77□□□□□ -2.29
HSPG2P98160 AC099336.2-201ENST00000422457 254 ntBASIC0.77□□□□□ -2.29
HSPG2P98160 AC008850.1-201ENST00000427546 362 ntBASIC0.77□□□□□ -2.29
HSPG2P98160 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC0.77□□□□□ -2.29
HSPG2P98160 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC0.77□□□□□ -2.29
HSPG2P98160 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC0.77□□□□□ -2.29
HSPG2P98160 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC0.77□□□□□ -2.29
HSPG2P98160 CBX3P2-202ENST00000583365 535 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms