Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.62□□□□□ -1.99
COL4A4P53420 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC2.62□□□□□ -1.99
COL4A4P53420 RPL36AP6-201ENST00000435770 321 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 MTND6P18-201ENST00000439477 513 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 RPS27P5-201ENST00000444247 244 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 AP000542.1-201ENST00000448473 371 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 AC107015.1-201ENST00000466902 747 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 RPL31P58-201ENST00000469001 379 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 SETP11-201ENST00000473027 690 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 RPL23AP45-201ENST00000476406 468 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 RPS27P27-201ENST00000498779 255 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 AC008885.2-201ENST00000509506 930 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 AC093281.2-201ENST00000510153 597 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.62□□□□□ -1.99
COL4A4P53420 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.62□□□□□ -1.99
COL4A4P53420 CENPUP2-201ENST00000555897 1186 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.62□□□□□ -1.99
COL4A4P53420 RPL23AP84-201ENST00000571193 464 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 MIR3912-201ENST00000577566 105 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 SNORA59B-202ENST00000578183 701 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 MIR4781-201ENST00000585250 76 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 AL020997.3-201ENST00000602843 359 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC2.62□□□□□ -1.99
COL4A4P53420 AC005021.1-201ENST00000608730 355 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 AC004825.2-201ENST00000616634 455 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 AC009878.1-201ENST00000621819 340 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 AC022140.2-201ENST00000623500 188 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 OR5AK4P-201ENST00000635912 903 ntBASIC2.62□□□□□ -1.99
COL4A4P53420 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL4A4P53420 ZNF849P-201ENST00000594711 1566 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.61□□□□□ -1.99
COL4A4P53420 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
COL4A4P53420 UBE2Q2P1-202ENST00000354771 883 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 MCTS2P-201ENST00000394552 546 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 AC069218.2-201ENST00000411665 344 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.61□□□□□ -1.99
COL4A4P53420 Z99497.1-201ENST00000421282 135 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 AC098614.3-201ENST00000438957 440 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 HMGB1P48-201ENST00000446155 598 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC2.61□□□□□ -1.99
COL4A4P53420 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.61□□□□□ -1.99
COL4A4P53420 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.61□□□□□ -1.99
COL4A4P53420 AC116353.2-201ENST00000505332 712 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 AC104090.1-201ENST00000506341 1171 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 Y_RNA.695-201ENST00000516715 107 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 NAP1L1P1-201ENST00000524793 1063 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 MTCO3P15-201ENST00000526563 574 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC2.61□□□□□ -1.99
COL4A4P53420 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC2.61□□□□□ -1.99
COL4A4P53420 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.61□□□□□ -1.99
COL4A4P53420 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC2.61□□□□□ -1.99
COL4A4P53420 AC010928.3-201ENST00000587712 541 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 TPMTP1-201ENST00000592307 737 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 AL137072.1-201ENST00000603444 466 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 AP003117.2-201ENST00000606010 545 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 AC091965.4-201ENST00000607691 587 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 AC004067.1-201ENST00000608733 700 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 AC108747.1-201ENST00000609508 535 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 AC009318.2-201ENST00000610917 651 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 MIR6873-201ENST00000622788 63 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 SEPT14P19-203ENST00000633205 211 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 MFSD8-245ENST00000641743 948 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 Z73965.1-201ENST00000623412 2297 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 AC092447.7-201ENST00000422212 1621 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.61□□□□□ -1.99
COL4A4P53420 WWP1P1-201ENST00000466609 2769 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
COL4A4P53420 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
COL4A4P53420 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.61□□□□□ -1.99
COL4A4P53420 MTND5P11-201ENST00000511037 1812 ntBASIC2.61□□□□□ -1.99
COL4A4P53420 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A4P53420 U3.4-201ENST00000363352 213 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.6□□□□□ -1.99
COL4A4P53420 RNU6-1119P-201ENST00000384349 108 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 RNU6-14P-201ENST00000384630 106 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
COL4A4P53420 Y_RNA.578-201ENST00000390903 88 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 RNA5SP210-201ENST00000391034 120 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 SNORA26.8-201ENST00000391306 124 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 ERHP2-201ENST00000402323 299 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 GSTA9P-201ENST00000406231 611 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 BTF3P8-201ENST00000414577 526 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC2.6□□□□□ -1.99
COL4A4P53420 CCDC58P2-201ENST00000417131 366 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AC098592.1-201ENST00000419352 333 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC2.6□□□□□ -1.99
COL4A4P53420 AC023128.2-201ENST00000420880 1223 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AL592045.1-201ENST00000429867 352 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AC011816.1-201ENST00000441346 546 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AC068135.1-201ENST00000446164 246 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 MTCO1P48-201ENST00000448024 1096 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AC244505.3-201ENST00000454598 187 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 MTCO3P38-201ENST00000468910 766 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 VN1R17P-201ENST00000472048 1090 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.6□□□□□ -1.99
COL4A4P53420 AC026414.1-201ENST00000504046 698 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 AC021146.7-201ENST00000509604 775 ntBASIC2.6□□□□□ -1.99
COL4A4P53420 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC2.6□□□□□ -1.99
COL4A4P53420 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.6□□□□□ -1.99
COL4A4P53420 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms