Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.03□□□□□ -1.92
SOX3P41225 RPL23AP83-201ENST00000434984 473 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AC090774.1-201ENST00000435925 246 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AL353706.1-201ENST00000436728 494 ntBASIC3.03□□□□□ -1.92
SOX3P41225 PGBD4P3-201ENST00000440731 581 ntBASIC3.03□□□□□ -1.92
SOX3P41225 ATP5C1P1-201ENST00000441945 895 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.03□□□□□ -1.92
SOX3P41225 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.03□□□□□ -1.92
SOX3P41225 Z75741.1-201ENST00000446793 314 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.03□□□□□ -1.92
SOX3P41225 SSXP1-201ENST00000453640 473 ntBASIC3.03□□□□□ -1.92
SOX3P41225 SNORD42A-201ENST00000459584 64 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.03□□□□□ -1.92
SOX3P41225 RAP1BP2-201ENST00000478270 544 ntBASIC3.03□□□□□ -1.92
SOX3P41225 LARP1BP2-201ENST00000486594 519 ntBASIC3.03□□□□□ -1.92
SOX3P41225 RPL23AP55-201ENST00000498163 452 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AC110794.1-201ENST00000505816 425 ntBASIC3.03□□□□□ -1.92
SOX3P41225 CBX3P3-201ENST00000508108 532 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.03□□□□□ -1.92
SOX3P41225 RN7SKP244-201ENST00000516513 307 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.03□□□□□ -1.92
SOX3P41225 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.03□□□□□ -1.92
SOX3P41225 AC245166.1-201ENST00000521012 253 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.03□□□□□ -1.92
SOX3P41225 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.03□□□□□ -1.92
SOX3P41225 AP000907.2-201ENST00000530827 353 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.03□□□□□ -1.92
SOX3P41225 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
SOX3P41225 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
SOX3P41225 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.03□□□□□ -1.92
SOX3P41225 AC123904.2-201ENST00000548059 300 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.03□□□□□ -1.92
SOX3P41225 MIR5680-201ENST00000577577 84 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.03□□□□□ -1.92
SOX3P41225 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.03□□□□□ -1.92
SOX3P41225 BNIP3P8-201ENST00000597863 560 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AC011468.4-201ENST00000603942 409 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AC073657.2-201ENST00000605661 303 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AC108479.2-201ENST00000617314 601 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AC009509.4-201ENST00000619202 509 ntBASIC3.03□□□□□ -1.92
SOX3P41225 SNORD39.4-201ENST00000620099 78 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AL590240.3-201ENST00000621416 943 ntBASIC3.03□□□□□ -1.92
SOX3P41225 AC073476.4-201ENST00000628409 72 ntBASIC3.03□□□□□ -1.92
SOX3P41225 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
SOX3P41225 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.03□□□□□ -1.92
SOX3P41225 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.02□□□□□ -1.93
SOX3P41225 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
SOX3P41225 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
SOX3P41225 RNU4-24P-201ENST00000364565 139 ntBASIC3.02□□□□□ -1.93
SOX3P41225 Y_RNA.318-201ENST00000365131 97 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
SOX3P41225 SNORA9-201ENST00000384215 133 ntBASIC3.02□□□□□ -1.93
SOX3P41225 HMGN1P14-201ENST00000412459 517 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AC007899.1-201ENST00000412776 775 ntBASIC3.02□□□□□ -1.93
SOX3P41225 MTCO2P34-201ENST00000421994 607 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.02□□□□□ -1.93
SOX3P41225 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.02□□□□□ -1.93
SOX3P41225 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.02□□□□□ -1.93
SOX3P41225 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.02□□□□□ -1.93
SOX3P41225 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.02□□□□□ -1.93
SOX3P41225 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.02□□□□□ -1.93
SOX3P41225 RPL35AP22-201ENST00000436855 335 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AC004866.2-201ENST00000438285 481 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AC006028.1-201ENST00000438379 402 ntBASIC3.02□□□□□ -1.93
SOX3P41225 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.02□□□□□ -1.93
SOX3P41225 RPL17P49-201ENST00000443728 411 ntBASIC3.02□□□□□ -1.93
SOX3P41225 TPT1P14-201ENST00000448018 505 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AL033528.1-201ENST00000453780 140 ntBASIC3.02□□□□□ -1.93
SOX3P41225 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.02□□□□□ -1.93
SOX3P41225 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.02□□□□□ -1.93
SOX3P41225 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.02□□□□□ -1.93
SOX3P41225 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.02□□□□□ -1.93
SOX3P41225 AC026427.2-201ENST00000506228 536 ntBASIC3.02□□□□□ -1.93
SOX3P41225 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.02□□□□□ -1.93
SOX3P41225 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.02□□□□□ -1.93
SOX3P41225 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.02□□□□□ -1.93
SOX3P41225 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.02□□□□□ -1.93
SOX3P41225 AC022447.1-201ENST00000515358 464 ntBASIC3.02□□□□□ -1.93
SOX3P41225 SNORA31.8-201ENST00000516327 108 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AP003467.2-201ENST00000520175 319 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AC022616.6-201ENST00000520479 119 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AP002963.1-201ENST00000530590 184 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AP003122.4-201ENST00000530980 758 ntBASIC3.02□□□□□ -1.93
SOX3P41225 SNRPGP16-201ENST00000533275 226 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AL133271.1-201ENST00000538229 291 ntBASIC3.02□□□□□ -1.93
SOX3P41225 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.02□□□□□ -1.93
SOX3P41225 RPL21P12-201ENST00000559810 515 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.02□□□□□ -1.93
SOX3P41225 AL356432.3-201ENST00000568952 465 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AC009977.1-201ENST00000586015 570 ntBASIC3.02□□□□□ -1.93
SOX3P41225 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.02□□□□□ -1.93
SOX3P41225 AC012443.1-201ENST00000605605 231 ntBASIC3.02□□□□□ -1.93
SOX3P41225 RNU6-87P-201ENST00000607561 108 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AC099778.2-201ENST00000610904 211 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AC093838.1-201ENST00000613014 469 ntBASIC3.02□□□□□ -1.93
SOX3P41225 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AC112204.3-201ENST00000623822 332 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.02□□□□□ -1.93
SOX3P41225 AC068137.4-201ENST00000638485 296 ntBASIC3.02□□□□□ -1.93
SOX3P41225 AC099654.13-201ENST00000639774 207 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms