Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXC9P31274 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXC9P31274 AL138799.3-201ENST00000438968 350 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 GDI2P2-201ENST00000445131 608 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXC9P31274 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXC9P31274 AC116337.2-201ENST00000477662 156 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXC9P31274 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.7□□□□□ -1.82
HOXC9P31274 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXC9P31274 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXC9P31274 AP004242.1-201ENST00000533701 349 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 AC126177.3-201ENST00000551839 688 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 AC091489.2-201ENST00000566263 604 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXC9P31274 MIR4307-201ENST00000582802 84 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.7□□□□□ -1.82
HOXC9P31274 AL353997.4-201ENST00000586196 166 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 AP000403.1-201ENST00000603349 851 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 AC112187.2-201ENST00000604345 283 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 AC004832.5-201ENST00000608677 401 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 AL590099.1-201ENST00000615276 138 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 AC027807.2-201ENST00000616099 408 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 U7.8-201ENST00000619968 63 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXC9P31274 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
HOXC9P31274 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXC9P31274 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXC9P31274 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXC9P31274 AC092435.3-201ENST00000565538 3654 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXC9P31274 RNU6-712P-201ENST00000410558 100 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 RN7SKP142-201ENST00000411236 328 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXC9P31274 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXC9P31274 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXC9P31274 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXC9P31274 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXC9P31274 RPL32P28-201ENST00000443577 397 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 TAF9P1-201ENST00000445421 515 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 AL360221.1-201ENST00000445989 335 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 UQCRHP3-201ENST00000451503 251 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 TAF9P2-201ENST00000454958 515 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 snoU109.4-201ENST00000458953 143 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 RPL21P41-201ENST00000459863 264 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 RPS27AP1-201ENST00000475545 471 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 AP000797.1-201ENST00000478870 387 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXC9P31274 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXC9P31274 MTND4LP18-201ENST00000526864 291 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXC9P31274 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.69□□□□□ -1.82
HOXC9P31274 AC234778.2-201ENST00000566241 354 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HOXC9P31274 AC012669.1-201ENST00000603209 283 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 AC128687.1-201ENST00000605304 619 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 BCRP9-201ENST00000605312 388 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 AC091965.4-201ENST00000607691 587 ntBASIC3.69□□□□□ -1.82
HOXC9P31274 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXC9P31274 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXC9P31274 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXC9P31274 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXC9P31274 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
HOXC9P31274 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXC9P31274 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HOXC9P31274 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 Y_RNA.51-201ENST00000362725 102 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 MIR512-1-201ENST00000384913 84 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXC9P31274 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXC9P31274 MTND4LP10-201ENST00000435146 291 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.68□□□□□ -1.82
HOXC9P31274 RPL7P36-201ENST00000444633 681 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 COX6CP2-201ENST00000444980 225 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 MTCO1P42-201ENST00000457379 726 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 RPL9P32-201ENST00000464118 620 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 AC034222.1-201ENST00000494052 532 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXC9P31274 AC005921.1-201ENST00000510589 286 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXC9P31274 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXC9P31274 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXC9P31274 AC012414.6-201ENST00000568241 401 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 AC034268.2-201ENST00000571784 482 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 AC090616.5-202ENST00000582111 297 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXC9P31274 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXC9P31274 AC083760.1-201ENST00000589621 670 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 AC012065.4-201ENST00000602445 679 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 XIAPP1-201ENST00000603162 600 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXC9P31274 AC233263.6-201ENST00000631132 1963 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXC9P31274 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXC9P31274 AC004972.1-201ENST00000623934 2209 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXC9P31274 AC021755.1-201ENST00000559747 1447 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 AC092447.10-201ENST00000620607 1652 ntBASIC3.68□□□□□ -1.82
HOXC9P31274 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms