Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXD3P31249 AP004242.1-201ENST00000533701 349 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXD3P31249 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXD3P31249 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXD3P31249 AL118558.2-201ENST00000556294 238 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXD3P31249 MIR4703-201ENST00000577728 79 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXD3P31249 AL022099.1-201ENST00000604551 712 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 AC245389.1-201ENST00000605141 529 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 MIR6130-201ENST00000619419 109 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 AL589994.2-201ENST00000621124 579 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 AL353748.2-201ENST00000622148 471 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 AC110801.1-201ENST00000623590 212 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXD3P31249 U6.114-201ENST00000636407 96 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 AC099654.10-201ENST00000640395 161 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD3P31249 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD3P31249 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXD3P31249 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
HOXD3P31249 AC006026.1-201ENST00000444025 1803 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXD3P31249 SUPT16HP1-201ENST00000537175 3133 ntBASIC3.3□□□□□ -1.88
HOXD3P31249 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXD3P31249 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
HOXD3P31249 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
HOXD3P31249 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXD3P31249 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXD3P31249 Y_RNA.11-201ENST00000362375 109 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 RNU1-20P-201ENST00000363314 162 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 Y_RNA.373-201ENST00000365600 103 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 RNU6-946P-201ENST00000383878 107 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 SNORD3H-201ENST00000384486 214 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
HOXD3P31249 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
HOXD3P31249 AL359634.1-202ENST00000404721 284 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 RNA5SP36-201ENST00000410197 133 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 RN7SKP167-201ENST00000411047 285 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 EEF1A1P40-201ENST00000412883 573 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXD3P31249 AL157831.1-201ENST00000426134 473 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 MTND1P14-201ENST00000427400 950 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 AC008850.1-201ENST00000427546 362 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXD3P31249 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXD3P31249 AL162151.2-201ENST00000448875 158 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD3P31249 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD3P31249 HMGN2P26-201ENST00000463169 339 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 AL132838.2-201ENST00000492041 314 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.29□□□□□ -1.88
HOXD3P31249 AC005921.1-201ENST00000510589 286 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 AC023141.12-201ENST00000512399 199 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXD3P31249 RNU2-58P-201ENST00000516403 183 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 RNA5SP49-201ENST00000516450 115 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 RNA5SP519-201ENST00000516480 119 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 SNORA31.22-201ENST00000517204 135 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 MYL12AP1-201ENST00000518490 515 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD3P31249 AC100870.1-201ENST00000522035 505 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD3P31249 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD3P31249 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXD3P31249 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD3P31249 AC078814.3-201ENST00000553036 491 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXD3P31249 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.29□□□□□ -1.88
HOXD3P31249 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD3P31249 MIR4795-201ENST00000584182 89 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 AC006130.2-201ENST00000586202 326 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 AC010928.3-201ENST00000587712 541 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.29□□□□□ -1.88
HOXD3P31249 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXD3P31249 AC135507.2-201ENST00000612443 309 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 MIR6875-201ENST00000617506 72 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 AC007546.1-201ENST00000619452 559 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 MIR8059-201ENST00000620427 81 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 AL445363.3-201ENST00000623080 671 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXD3P31249 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.29□□□□□ -1.88
HOXD3P31249 AC008725.1-201ENST00000605123 2263 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXD3P31249 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXD3P31249 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HOXD3P31249 AC090337.1-201ENST00000579651 2074 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 FAM91A3P-201ENST00000456826 2544 ntBASIC3.29□□□□□ -1.88
HOXD3P31249 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXD3P31249 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXD3P31249 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
HOXD3P31249 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.29□□□□□ -1.88
HOXD3P31249 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD3P31249 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.28□□□□□ -1.88
HOXD3P31249 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD3P31249 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HOXD3P31249 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.28□□□□□ -1.88
HOXD3P31249 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms