Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC1.73□□□□□ -2.13
HLA-DMBP28068 AL022067.1-201ENST00000602426 454 ntBASIC1.73□□□□□ -2.13
HLA-DMBP28068 AC116312.1-201ENST00000606841 314 ntBASIC1.73□□□□□ -2.13
HLA-DMBP28068 TUG1_1.1-201ENST00000610654 145 ntBASIC1.73□□□□□ -2.13
HLA-DMBP28068 CU459211.1-201ENST00000635667 749 ntBASIC1.73□□□□□ -2.13
HLA-DMBP28068 AL590396.4-201ENST00000636779 956 ntBASIC1.73□□□□□ -2.13
HLA-DMBP28068 ANKRD26P2-201ENST00000445530 1710 ntBASIC1.73□□□□□ -2.13
HLA-DMBP28068 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
HLA-DMBP28068 AL049641.1-201ENST00000441055 1948 ntBASIC1.73□□□□□ -2.13
HLA-DMBP28068 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.73□□□□□ -2.13
HLA-DMBP28068 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
HLA-DMBP28068 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
HLA-DMBP28068 AC016717.2-201ENST00000609089 5141 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC1.72□□□□□ -2.13
HLA-DMBP28068 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
HLA-DMBP28068 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
HLA-DMBP28068 RNU6-792P-201ENST00000363490 107 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
HLA-DMBP28068 RNU1-52P-201ENST00000384190 164 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 RNU6-481P-201ENST00000384194 107 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 SNORA51.11-201ENST00000384442 131 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 RNU6-932P-201ENST00000391108 106 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
HLA-DMBP28068 AL035405.1-201ENST00000400795 710 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 RPS3AP24-201ENST00000407896 734 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC1.72□□□□□ -2.13
HLA-DMBP28068 RNU4-72P-201ENST00000410754 173 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 RN7SKP140-201ENST00000411196 284 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 RNU6-575P-201ENST00000411326 105 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 MTCO3P30-201ENST00000426425 670 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC1.72□□□□□ -2.13
HLA-DMBP28068 AL590383.1-201ENST00000428602 75 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 WARS2P1-201ENST00000429678 537 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 UBE2D3P1-201ENST00000436669 444 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 AC018634.1-201ENST00000437554 401 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC1.72□□□□□ -2.13
HLA-DMBP28068 AC108734.3-201ENST00000481241 1165 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
HLA-DMBP28068 ANXA2P1-201ENST00000505539 926 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 TTC39CP1-201ENST00000512513 755 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 NDUFS5P6-201ENST00000529136 295 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
HLA-DMBP28068 AL512310.1-201ENST00000548639 172 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 AC090502.2-201ENST00000549267 280 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC1.72□□□□□ -2.13
HLA-DMBP28068 AC105137.2-201ENST00000569073 466 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC1.72□□□□□ -2.13
HLA-DMBP28068 MIR4666A-201ENST00000580160 79 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC1.72□□□□□ -2.13
HLA-DMBP28068 AL356280.1-201ENST00000603614 379 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 OR4H6P-202ENST00000603819 340 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 AC103710.4-201ENST00000609301 899 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 AL592148.2-201ENST00000612210 372 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
HLA-DMBP28068 HMGB1P24-202ENST00000615653 685 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 MIR6766-201ENST00000622641 72 ntBASIC1.72□□□□□ -2.13
HLA-DMBP28068 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
HLA-DMBP28068 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
HLA-DMBP28068 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
HLA-DMBP28068 CKAP2P1-201ENST00000555477 2049 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 AC009902.3-201ENST00000606235 2172 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
HLA-DMBP28068 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.14
HLA-DMBP28068 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC1.71□□□□□ -2.14
HLA-DMBP28068 OR5T3-201ENST00000303059 1023 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
HLA-DMBP28068 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
HLA-DMBP28068 U8.2-201ENST00000363156 134 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 RNU6-353P-201ENST00000364266 108 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 RNU1-91P-201ENST00000364746 163 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC1.71□□□□□ -2.14
HLA-DMBP28068 RNU6-657P-201ENST00000383904 107 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 SNORA70B-201ENST00000384210 135 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 MIR217-201ENST00000384817 110 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 MIR325-201ENST00000385260 98 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 AL133264.1-201ENST00000407157 562 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 AL513331.1-201ENST00000411908 397 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC1.71□□□□□ -2.14
HLA-DMBP28068 IPO7P1-201ENST00000442031 636 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC1.71□□□□□ -2.14
HLA-DMBP28068 SUMO2P2-201ENST00000456482 255 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC1.71□□□□□ -2.14
HLA-DMBP28068 AC078857.1-201ENST00000469870 667 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 AC090255.1-201ENST00000495779 349 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC1.71□□□□□ -2.14
HLA-DMBP28068 SNORA48.10-201ENST00000516965 160 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 SNORA31.18-201ENST00000517043 134 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 SNORA31.22-201ENST00000517204 135 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC1.71□□□□□ -2.14
HLA-DMBP28068 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC1.71□□□□□ -2.14
HLA-DMBP28068 MTCYBP20-201ENST00000524239 1129 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 AC023824.2-201ENST00000566185 400 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC1.71□□□□□ -2.14
HLA-DMBP28068 AC025281.1-201ENST00000567026 265 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 RPS3AP23-202ENST00000574601 686 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC1.71□□□□□ -2.14
HLA-DMBP28068 MIR3945-201ENST00000581853 98 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 RPS15AP11-201ENST00000594193 385 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 ZNF92P2-201ENST00000600543 1059 ntBASIC1.71□□□□□ -2.14
HLA-DMBP28068 AC091946.2-201ENST00000606105 291 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms