Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RNU2-62P-201ENST00000410868 191 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 AL645937.1-202ENST00000421799 937 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 RPL21P66-201ENST00000426566 466 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 ERLEC1P1-201ENST00000433806 578 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC4.67□□□□□ -1.66
COL6A1P12109 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.67□□□□□ -1.66
COL6A1P12109 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.67□□□□□ -1.66
COL6A1P12109 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A1P12109 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A1P12109 SNORD19B-201ENST00000459623 84 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 AL591473.1-201ENST00000464297 313 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 AL136126.1-201ENST00000473603 402 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 RPL7P42-201ENST00000481005 679 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 RPL31P13-201ENST00000484151 370 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 AC108022.1-201ENST00000493466 478 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 HSPD1P15-201ENST00000505573 1122 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 AC021146.1-201ENST00000511202 716 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 RNU4-29P-201ENST00000515943 174 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 AC090281.1-201ENST00000523019 276 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 AC011979.2-201ENST00000527568 352 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.67□□□□□ -1.66
COL6A1P12109 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC4.67□□□□□ -1.66
COL6A1P12109 NCAPGP2-201ENST00000557911 754 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC4.67□□□□□ -1.66
COL6A1P12109 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC4.67□□□□□ -1.66
COL6A1P12109 AC020661.2-201ENST00000560114 134 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 AC093249.1-201ENST00000567049 203 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 RPL23AP97-201ENST00000568955 471 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 AC120057.2-201ENST00000571520 271 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 SNORD84-203ENST00000584275 78 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 AL022345.1-201ENST00000607292 135 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.67□□□□□ -1.66
COL6A1P12109 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 AL596245.1-201ENST00000618994 362 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 AC007546.2-201ENST00000623996 360 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A1P12109 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A1P12109 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.67□□□□□ -1.66
COL6A1P12109 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC4.67□□□□□ -1.66
COL6A1P12109 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL6A1P12109 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
COL6A1P12109 MARK2P15-201ENST00000432204 2186 ntBASIC4.67□□□□□ -1.66
COL6A1P12109 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
COL6A1P12109 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A1P12109 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.66□□□□□ -1.66
COL6A1P12109 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
COL6A1P12109 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.66□□□□□ -1.66
COL6A1P12109 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.66□□□□□ -1.66
COL6A1P12109 AC073343.1-201ENST00000328239 651 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 RNA5SP151-201ENST00000365632 117 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC4.66□□□□□ -1.66
COL6A1P12109 MIR606-201ENST00000384851 96 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 MIR548P-201ENST00000408336 84 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 RNU4-26P-201ENST00000410270 107 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 RNU2-37P-201ENST00000410695 177 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 RNU6-1148P-201ENST00000410992 104 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 NDUFB4P5-201ENST00000415445 361 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.66□□□□□ -1.66
COL6A1P12109 MTCYBP8-201ENST00000422855 651 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.66□□□□□ -1.66
COL6A1P12109 AC073587.1-201ENST00000447093 876 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 AC073415.1-201ENST00000449240 153 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 MTND3P16-201ENST00000452205 344 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 AC130509.1-201ENST00000464158 433 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.66□□□□□ -1.66
COL6A1P12109 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC4.66□□□□□ -1.66
COL6A1P12109 AC021382.1-201ENST00000483523 359 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.66□□□□□ -1.66
COL6A1P12109 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC4.66□□□□□ -1.66
COL6A1P12109 RN7SKP13-201ENST00000515933 244 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.66□□□□□ -1.66
COL6A1P12109 AC024224.1-201ENST00000538284 609 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC4.66□□□□□ -1.66
COL6A1P12109 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.66□□□□□ -1.66
COL6A1P12109 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.66□□□□□ -1.66
COL6A1P12109 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.66□□□□□ -1.66
COL6A1P12109 AC008638.3-201ENST00000603341 463 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 AC006023.2-201ENST00000609916 167 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 AL159972.1-201ENST00000625150 448 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.66□□□□□ -1.66
COL6A1P12109 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A1P12109 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A1P12109 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A1P12109 ASNSP3-201ENST00000451989 1306 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 AP001350.1-201ENST00000601906 1524 ntBASIC4.66□□□□□ -1.66
COL6A1P12109 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL6A1P12109 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
COL6A1P12109 AC009902.3-201ENST00000606235 2172 ntBASIC4.65□□□□□ -1.66
COL6A1P12109 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
COL6A1P12109 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
COL6A1P12109 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
COL6A1P12109 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.65□□□□□ -1.66
COL6A1P12109 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
COL6A1P12109 AC073346.2-201ENST00000624724 2058 ntBASIC4.65□□□□□ -1.66
COL6A1P12109 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 Y_RNA.128-201ENST00000363391 112 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL6A1P12109 RNU6-738P-201ENST00000384531 106 ntBASIC4.65□□□□□ -1.67
COL6A1P12109 RNU6-821P-201ENST00000390995 107 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 138.2 ms