Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.43□□□□□ -1.7
HMGB1P09429 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HMGB1P09429 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
HMGB1P09429 RNU6-511P-201ENST00000363496 107 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 RN7SKP227-201ENST00000364445 330 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC4.43□□□□□ -1.7
HMGB1P09429 RNU6-14P-201ENST00000384630 106 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 SEPT2P1-201ENST00000419651 180 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.43□□□□□ -1.7
HMGB1P09429 SKA2P1-201ENST00000425592 390 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 AL591419.1-201ENST00000427423 339 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC4.43□□□□□ -1.7
HMGB1P09429 AL592045.1-201ENST00000429867 352 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 COX6CP12-201ENST00000446748 202 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC4.43□□□□□ -1.7
HMGB1P09429 FABP5P15-201ENST00000453566 214 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 AL139824.2-201ENST00000458731 1095 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 RNU6-953P-201ENST00000459154 107 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC4.43□□□□□ -1.7
HMGB1P09429 AC092185.1-201ENST00000491371 97 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 AC010486.2-201ENST00000505572 483 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 SEM1P1-201ENST00000506694 209 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 RN7SKP83-201ENST00000516512 178 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.43□□□□□ -1.7
HMGB1P09429 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC4.43□□□□□ -1.7
HMGB1P09429 AL845331.3-202ENST00000562856 261 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 AC011471.1-201ENST00000585766 187 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 AC104763.2-201ENST00000604179 382 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 AC112191.3-201ENST00000604371 277 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.43□□□□□ -1.7
HMGB1P09429 DUSP12P1-201ENST00000612874 516 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 AL603755.1-201ENST00000619504 163 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC4.43□□□□□ -1.7
HMGB1P09429 AC009878.1-201ENST00000621819 340 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HMGB1P09429 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HMGB1P09429 RNU6-1180P-201ENST00000364935 107 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 RNU5A-2P-201ENST00000384337 116 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
HMGB1P09429 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HMGB1P09429 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC4.42□□□□□ -1.7
HMGB1P09429 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.42□□□□□ -1.7
HMGB1P09429 BPY2DP-201ENST00000422208 265 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 AC098614.2-201ENST00000426040 255 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 ISCA1P1-201ENST00000426679 387 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 HSPD1P21-201ENST00000436541 245 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC4.42□□□□□ -1.7
HMGB1P09429 MTND1P12-201ENST00000455231 147 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC4.42□□□□□ -1.7
HMGB1P09429 RPL23AP70-201ENST00000483361 460 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 MTND1P3-201ENST00000484956 952 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 AC139453.3-201ENST00000493276 369 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 HSPD1P15-201ENST00000505573 1122 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 AC010587.1-201ENST00000505809 469 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 TRAV37-201ENST00000553906 342 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC4.42□□□□□ -1.7
HMGB1P09429 MIR3915-201ENST00000578518 97 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 MIR5187-201ENST00000583479 76 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 BNIP3P9-201ENST00000603714 553 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 AC012360.2-201ENST00000609349 391 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HMGB1P09429 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.42□□□□□ -1.7
HMGB1P09429 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.42□□□□□ -1.7
HMGB1P09429 AC091931.1-201ENST00000623488 728 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 AC026241.1-201ENST00000517873 2142 ntBASIC4.42□□□□□ -1.7
HMGB1P09429 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.41□□□□□ -1.7
HMGB1P09429 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
HMGB1P09429 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HMGB1P09429 RNU5E-6P-201ENST00000365574 115 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HMGB1P09429 SMIM11P1-201ENST00000369586 178 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 RNU6-658P-201ENST00000384606 106 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 MIR30B-201ENST00000384850 88 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 FO393413.1-201ENST00000402892 195 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC4.41□□□□□ -1.7
HMGB1P09429 AL353729.1-201ENST00000425044 720 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.41□□□□□ -1.7
HMGB1P09429 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC4.41□□□□□ -1.7
HMGB1P09429 AC091286.1-201ENST00000431233 461 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 RPS24P13-201ENST00000442520 397 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 RNU6-1092P-201ENST00000516955 87 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 RNA5SP337-201ENST00000517007 109 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC4.41□□□□□ -1.7
HMGB1P09429 GLYCAM1-201ENST00000546596 285 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 MRPS36P5-201ENST00000551909 298 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 NACAP3-201ENST00000552100 481 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC4.41□□□□□ -1.7
HMGB1P09429 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.41□□□□□ -1.7
HMGB1P09429 RN7SL703P-201ENST00000578485 302 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 AC103810.1-201ENST00000579873 453 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 AL358072.1-201ENST00000604156 575 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.41□□□□□ -1.7
HMGB1P09429 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.41□□□□□ -1.7
HMGB1P09429 MIR6810-201ENST00000622701 70 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 AC007998.5-201ENST00000622938 237 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 AC120349.3-201ENST00000624377 529 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 MIR3199-2-201ENST00000636243 86 ntBASIC4.41□□□□□ -1.7
HMGB1P09429 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
HMGB1P09429 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HMGB1P09429 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 138.3 ms