Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 MTCO1P43-201ENST00000431831 488 ntBASIC1.18□□□□□ -2.22
SPTA1P02549 CASP3P1-201ENST00000446037 609 ntBASIC1.18□□□□□ -2.22
SPTA1P02549 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC1.18□□□□□ -2.22
SPTA1P02549 AP004242.1-201ENST00000533701 349 ntBASIC1.18□□□□□ -2.22
SPTA1P02549 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC1.18□□□□□ -2.22
SPTA1P02549 HSPE1P3-201ENST00000559254 309 ntBASIC1.18□□□□□ -2.22
SPTA1P02549 AC006270.2-201ENST00000578523 652 ntBASIC1.18□□□□□ -2.22
SPTA1P02549 MIR3660-201ENST00000584845 100 ntBASIC1.18□□□□□ -2.22
SPTA1P02549 AC123786.2-201ENST00000603459 275 ntBASIC1.18□□□□□ -2.22
SPTA1P02549 MIR924-201ENST00000638017 53 ntBASIC1.18□□□□□ -2.22
SPTA1P02549 AC135776.4-201ENST00000624300 1904 ntBASIC1.17□□□□□ -2.22
SPTA1P02549 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC1.17□□□□□ -2.22
SPTA1P02549 RNU2-40P-201ENST00000410833 196 ntBASIC1.17□□□□□ -2.22
SPTA1P02549 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC1.17□□□□□ -2.22
SPTA1P02549 HMGB3P21-201ENST00000452483 547 ntBASIC1.17□□□□□ -2.22
SPTA1P02549 SNORD108-201ENST00000459332 71 ntBASIC1.17□□□□□ -2.22
SPTA1P02549 AC006499.2-201ENST00000513470 337 ntBASIC1.17□□□□□ -2.22
SPTA1P02549 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC1.17□□□□□ -2.22
SPTA1P02549 RNA5SP436-201ENST00000516020 115 ntBASIC1.17□□□□□ -2.22
SPTA1P02549 AP003033.1-201ENST00000527244 415 ntBASIC1.17□□□□□ -2.22
SPTA1P02549 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC1.17□□□□□ -2.22
SPTA1P02549 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC1.17□□□□□ -2.22
SPTA1P02549 AC233266.2-201ENST00000567067 528 ntBASIC1.17□□□□□ -2.22
SPTA1P02549 AC024619.4-201ENST00000580924 316 ntBASIC1.17□□□□□ -2.22
SPTA1P02549 AL020996.3-201ENST00000606617 222 ntBASIC1.17□□□□□ -2.22
SPTA1P02549 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.17□□□□□ -2.22
SPTA1P02549 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC1.17□□□□□ -2.22
SPTA1P02549 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
SPTA1P02549 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
SPTA1P02549 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
SPTA1P02549 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
SPTA1P02549 HSPE1P11-201ENST00000339579 310 ntBASIC1.17□□□□□ -2.22
SPTA1P02549 AC016769.3-201ENST00000396562 315 ntBASIC1.17□□□□□ -2.22
SPTA1P02549 AL356057.2-201ENST00000403318 432 ntBASIC1.17□□□□□ -2.22
SPTA1P02549 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC1.17□□□□□ -2.22
SPTA1P02549 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC1.17□□□□□ -2.22
SPTA1P02549 OR9N1P-202ENST00000494289 481 ntBASIC1.17□□□□□ -2.22
SPTA1P02549 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC1.17□□□□□ -2.22
SPTA1P02549 AC093752.1-206ENST00000511823 336 ntBASIC1.17□□□□□ -2.22
SPTA1P02549 RN7SKP34-201ENST00000516142 244 ntBASIC1.17□□□□□ -2.22
SPTA1P02549 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC1.17□□□□□ -2.22
SPTA1P02549 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC1.17□□□□□ -2.22
SPTA1P02549 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
SPTA1P02549 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC1.17□□□□□ -2.22
SPTA1P02549 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC1.16□□□□□ -2.22
SPTA1P02549 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC1.16□□□□□ -2.22
SPTA1P02549 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1.16□□□□□ -2.22
SPTA1P02549 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC1.16□□□□□ -2.22
SPTA1P02549 AC022022.1-201ENST00000430304 178 ntBASIC1.16□□□□□ -2.22
SPTA1P02549 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.16□□□□□ -2.22
SPTA1P02549 RPL37P25-201ENST00000507308 276 ntBASIC1.16□□□□□ -2.22
SPTA1P02549 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC1.16□□□□□ -2.22
SPTA1P02549 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
SPTA1P02549 RNU1-109P-201ENST00000383960 147 ntBASIC1.16□□□□□ -2.22
SPTA1P02549 RNU6-997P-201ENST00000384725 107 ntBASIC1.16□□□□□ -2.22
SPTA1P02549 RNA5SP354-201ENST00000391247 136 ntBASIC1.16□□□□□ -2.22
SPTA1P02549 RNU2-25P-201ENST00000411041 191 ntBASIC1.16□□□□□ -2.22
SPTA1P02549 TATDN1P1-201ENST00000414123 891 ntBASIC1.16□□□□□ -2.22
SPTA1P02549 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.16□□□□□ -2.22
SPTA1P02549 CYCSP48-201ENST00000417124 323 ntBASIC1.16□□□□□ -2.22
SPTA1P02549 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC1.16□□□□□ -2.22
SPTA1P02549 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.16□□□□□ -2.22
SPTA1P02549 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.16□□□□□ -2.22
SPTA1P02549 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC1.16□□□□□ -2.22
SPTA1P02549 BMI1P1-201ENST00000445879 941 ntBASIC1.16□□□□□ -2.22
SPTA1P02549 AL360221.1-201ENST00000445989 335 ntBASIC1.16□□□□□ -2.22
SPTA1P02549 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.16□□□□□ -2.22
SPTA1P02549 AC004022.1-201ENST00000447766 1066 ntBASIC1.16□□□□□ -2.22
SPTA1P02549 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC1.16□□□□□ -2.22
SPTA1P02549 AC025755.1-201ENST00000521306 278 ntBASIC1.16□□□□□ -2.22
SPTA1P02549 OR4V1P-201ENST00000525394 1140 ntBASIC1.16□□□□□ -2.22
SPTA1P02549 AC009127.3-201ENST00000570531 403 ntBASIC1.16□□□□□ -2.22
SPTA1P02549 MIR4458-201ENST00000578872 75 ntBASIC1.16□□□□□ -2.22
SPTA1P02549 AC010487.4-201ENST00000637027 61 ntBASIC1.16□□□□□ -2.22
SPTA1P02549 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
SPTA1P02549 RNA5SP393-201ENST00000363423 117 ntBASIC1.15□□□□□ -2.23
SPTA1P02549 HSPE1P1-201ENST00000421494 318 ntBASIC1.15□□□□□ -2.23
SPTA1P02549 AC096571.1-202ENST00000506634 735 ntBASIC1.15□□□□□ -2.23
SPTA1P02549 MTCO1P30-201ENST00000515244 580 ntBASIC1.15□□□□□ -2.23
SPTA1P02549 RNU1-92P-201ENST00000517017 135 ntBASIC1.15□□□□□ -2.23
SPTA1P02549 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC1.15□□□□□ -2.23
SPTA1P02549 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
SPTA1P02549 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC1.15□□□□□ -2.23
SPTA1P02549 CUL4AP1-201ENST00000514750 1863 ntBASIC1.15□□□□□ -2.23
SPTA1P02549 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.23
SPTA1P02549 MTND4P31-201ENST00000425607 1343 ntBASIC1.15□□□□□ -2.23
SPTA1P02549 CCNB2P1-201ENST00000399411 1150 ntBASIC1.15□□□□□ -2.23
SPTA1P02549 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.15□□□□□ -2.23
SPTA1P02549 AC092832.1-201ENST00000422934 400 ntBASIC1.15□□□□□ -2.23
SPTA1P02549 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC1.15□□□□□ -2.23
SPTA1P02549 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC1.15□□□□□ -2.23
SPTA1P02549 AC087343.1-201ENST00000477341 475 ntBASIC1.15□□□□□ -2.23
SPTA1P02549 AL132857.1-201ENST00000555180 708 ntBASIC1.15□□□□□ -2.23
SPTA1P02549 AC009318.3-201ENST00000616916 503 ntBASIC1.15□□□□□ -2.23
SPTA1P02549 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC1.15□□□□□ -2.23
SPTA1P02549 AP000676.4-201ENST00000624659 623 ntBASIC1.15□□□□□ -2.23
SPTA1P02549 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.15□□□□□ -2.23
SPTA1P02549 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC1.14□□□□□ -2.23
SPTA1P02549 PRELID3BP11-201ENST00000414230 479 ntBASIC1.14□□□□□ -2.23
SPTA1P02549 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms