Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 U73479.1-201ENST00000618062 168 ntBASIC5.34□□□□□ -1.55
USP3Q9Y6I4 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
USP3Q9Y6I4 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.34□□□□□ -1.56
USP3Q9Y6I4 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 AL049555.1-201ENST00000562834 1933 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 Y_RNA.84-201ENST00000363011 104 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 RNU6-595P-201ENST00000363944 107 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 RNU6-76P-201ENST00000384060 104 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 Y_RNA.464-201ENST00000384282 110 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 RNU6-378P-201ENST00000384324 107 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 RNA5SP187-201ENST00000384400 119 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 Y_RNA.533-201ENST00000384596 114 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 RNU6-837P-201ENST00000391056 108 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 MTCYBP2-201ENST00000407745 171 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 AP000275.1-201ENST00000411943 390 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 AL354714.3-201ENST00000447284 493 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 AC007686.1-201ENST00000488511 463 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 AC110792.1-201ENST00000491826 472 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 RN7SL441P-201ENST00000492388 296 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 RN7SL244P-201ENST00000493405 297 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 GMPSP1-201ENST00000514075 579 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 RNU6-927P-201ENST00000516199 100 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 RNA5SP43-201ENST00000516559 110 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 AL158827.2-201ENST00000602494 330 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 MIR3976-201ENST00000606807 139 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 AL691447.3-201ENST00000635020 330 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.33□□□□□ -1.56
USP3Q9Y6I4 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
USP3Q9Y6I4 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 AC026951.1-201ENST00000559530 2459 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 RN7SKP104-201ENST00000362605 328 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 SNORA74A-201ENST00000364089 198 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 Y_RNA.297-201ENST00000364950 91 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 RNA5SP455-201ENST00000365190 119 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 RNU6-178P-201ENST00000384631 104 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 Y_RNA.539-201ENST00000384635 107 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 MIR301A-201ENST00000385261 86 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 SDAD1P3-201ENST00000427380 333 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 COX6CP13-201ENST00000428703 226 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 AC006946.1-201ENST00000429106 328 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 RPL23AP2-201ENST00000471227 466 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 HMGN2P13-201ENST00000476476 274 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 RN7SL826P-201ENST00000479724 288 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 OR51K1P-201ENST00000510214 950 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 MIR892C-201ENST00000516410 77 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 RN7SKP234-201ENST00000517173 224 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 MIR4646-201ENST00000580775 63 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 AC107294.1-201ENST00000609524 467 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 AP000560.1-201ENST00000624150 1937 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 Z75746.1-201ENST00000440243 2080 ntBASIC5.32□□□□□ -1.56
USP3Q9Y6I4 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
USP3Q9Y6I4 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms