Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
VPS28Q9UK41 RNU6-533P-201ENST00000384144 107 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 RNVU1-14-201ENST00000384770 164 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
VPS28Q9UK41 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS28Q9UK41 RN7SKP111-201ENST00000410349 271 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 Z85995.1-201ENST00000415547 335 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 USP9YP26-201ENST00000421008 661 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 HSPE1P1-201ENST00000421494 318 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS28Q9UK41 AC091390.3-201ENST00000426478 338 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 TIMM9P1-201ENST00000436122 256 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 Z82210.1-201ENST00000440037 231 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 SNRPGP6-201ENST00000451124 220 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.49□□□□□ -1.85
VPS28Q9UK41 AL135752.1-201ENST00000479477 471 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 AP000563.1-201ENST00000490865 758 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
VPS28Q9UK41 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS28Q9UK41 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 RNU6-64P-201ENST00000517119 105 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 AC025881.1-201ENST00000518851 512 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS28Q9UK41 AC007115.1-201ENST00000546853 234 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC3.49□□□□□ -1.85
VPS28Q9UK41 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS28Q9UK41 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS28Q9UK41 AC008507.1-201ENST00000587506 734 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.49□□□□□ -1.85
VPS28Q9UK41 WISP1-OT1-201ENST00000602893 642 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 AC245517.5-201ENST00000611529 162 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
VPS28Q9UK41 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.49□□□□□ -1.85
VPS28Q9UK41 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS28Q9UK41 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.49□□□□□ -1.85
VPS28Q9UK41 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.49□□□□□ -1.85
VPS28Q9UK41 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
VPS28Q9UK41 AC022336.2-201ENST00000568966 2538 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
VPS28Q9UK41 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 MIR208A-201ENST00000362287 71 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 RNA5SP197-201ENST00000363357 119 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 RNU2-33P-201ENST00000410344 192 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 RPL17P12-201ENST00000413391 526 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 AC012498.1-201ENST00000424037 437 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 CETN4P-201ENST00000432407 469 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 MTND1P30-201ENST00000441241 901 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 BMI1P1-201ENST00000445879 941 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 AC010099.1-201ENST00000455434 375 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 AL031183.1-201ENST00000457667 207 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 LARP1BP2-201ENST00000486594 519 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 AC093663.1-201ENST00000497190 394 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 AF131216.2-201ENST00000512316 564 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 AC106038.2-201ENST00000520706 568 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 ATP5F1P5-201ENST00000526403 760 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 AMZ2P1-203ENST00000565833 850 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 AC067852.3-201ENST00000589177 561 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 GLUD1P4-201ENST00000590914 418 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 KC877982.1-201ENST00000602313 470 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 AC092354.1-201ENST00000606057 376 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 AL513302.2-201ENST00000562313 1842 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS28Q9UK41 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.48□□□□□ -1.85
VPS28Q9UK41 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
VPS28Q9UK41 AC110774.1-201ENST00000623567 2018 ntBASIC3.48□□□□□ -1.85
VPS28Q9UK41 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
VPS28Q9UK41 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
VPS28Q9UK41 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
VPS28Q9UK41 SNORA70.4-201ENST00000365509 134 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
VPS28Q9UK41 RNU6-1035P-201ENST00000384477 107 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
VPS28Q9UK41 MTCYBP36-201ENST00000404146 440 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AL359634.1-202ENST00000404721 284 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC3.47□□□□□ -1.85
VPS28Q9UK41 Z99755.1-201ENST00000414048 380 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.47□□□□□ -1.85
VPS28Q9UK41 RPL23AP82-202ENST00000427528 469 ntBASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms