Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
DDX28Q9NUL7 CR383658.2-201ENST00000547576 1525 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
DDX28Q9NUL7 RNA5SP197-201ENST00000363357 119 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 RNU6-799P-201ENST00000363567 107 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 SNORA38.1-201ENST00000364172 131 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 SNORA23-201ENST00000365128 182 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 RNU6-432P-201ENST00000384196 109 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 SNORA11.2-201ENST00000408318 127 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC2.95□□□□□ -1.94
DDX28Q9NUL7 SAR1AP4-201ENST00000429225 591 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC2.95□□□□□ -1.94
DDX28Q9NUL7 CYCSP32-201ENST00000440548 321 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC2.95□□□□□ -1.94
DDX28Q9NUL7 MTND2P24-201ENST00000453434 806 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 RN7SL807P-201ENST00000470923 297 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 LINC00888-204ENST00000487386 421 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 RPL30P5-201ENST00000494923 336 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AC135721.1-201ENST00000497954 479 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC2.95□□□□□ -1.94
DDX28Q9NUL7 GMPSP1-201ENST00000514075 579 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC2.95□□□□□ -1.94
DDX28Q9NUL7 SCARNA15.2-201ENST00000516409 127 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 RNU6-678P-201ENST00000516832 109 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 RNU6-798P-201ENST00000516912 103 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.95□□□□□ -1.94
DDX28Q9NUL7 CASP1P1-201ENST00000526345 212 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AC013828.2-201ENST00000532487 235 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AL133271.1-201ENST00000538229 291 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AC009094.1-201ENST00000564443 426 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 RPL23AP84-201ENST00000571193 464 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AC112187.2-201ENST00000604345 283 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 BCRP9-201ENST00000605312 388 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AC013476.2-201ENST00000614456 459 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AP000676.3-201ENST00000623299 569 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AC027309.3-201ENST00000623419 351 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 AC127502.3-201ENST00000636170 1206 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 NFIB-202ENST00000380924 840 ntTSL 5 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 SNORA46-201ENST00000384762 135 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 RNA5SP492-201ENST00000411330 114 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 HMGN1P24-201ENST00000412282 298 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 RPL23AP39-201ENST00000415533 405 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 DNAJA1P2-201ENST00000421360 1197 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 RPL7L1P10-201ENST00000427790 463 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AL590383.1-201ENST00000428602 75 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AC092573.2-201ENST00000434546 243 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AC009237.8-201ENST00000445492 379 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 BX510359.1-201ENST00000456973 237 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AL049874.1-201ENST00000489560 388 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AC021678.1-201ENST00000505195 936 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 HSPE1P20-201ENST00000538133 289 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AC005476.1-201ENST00000554427 397 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AC008751.2-201ENST00000597885 980 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AC106791.2-201ENST00000604680 391 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 HSPE1P7-201ENST00000604681 321 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AC103710.4-201ENST00000609301 899 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 AL138713.1-201ENST00000624026 2130 ntBASIC2.94□□□□□ -1.94
DDX28Q9NUL7 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
DDX28Q9NUL7 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 TPTE2P4-201ENST00000258589 1605 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 RNU4-35P-201ENST00000362588 141 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 Y_RNA.111-201ENST00000363248 100 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
DDX28Q9NUL7 RAP1BP1-201ENST00000412709 553 ntBASIC2.93□□□□□ -1.94
DDX28Q9NUL7 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms