Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 RAC1P2-201ENST00000511164 579 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 SNORA31.3-201ENST00000516029 96 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 OR5G4P-201ENST00000525251 760 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 YPEL5P3-201ENST00000547227 352 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 AC103987.3-201ENST00000582071 292 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 KLKP1-201ENST00000595979 403 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 HSPE1P7-201ENST00000604681 321 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 AC002076.2-201ENST00000617362 122 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 AC007785.2-201ENST00000598627 1916 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 AC007256.1-201ENST00000392253 2765 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 Y_RNA.194-201ENST00000363985 102 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 RNU6-169P-201ENST00000365336 107 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 SNORA62-201ENST00000365493 153 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 DYNLT3P1-201ENST00000378574 347 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 SNORA20.2-201ENST00000383922 131 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 RNU6-14P-201ENST00000384630 106 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 AC007899.1-201ENST00000412776 775 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 MTND3P17-201ENST00000416968 344 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 ZNF90P2-204ENST00000419323 1075 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 ELOCP4-201ENST00000420090 333 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 AL590383.1-201ENST00000428602 75 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 RPL31P35-201ENST00000431058 377 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 RPL23AP69-201ENST00000431134 458 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 AC073614.1-201ENST00000438690 650 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 SNORD97-201ENST00000459187 142 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 AC091179.1-201ENST00000461606 579 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 RPL7P5-201ENST00000471472 736 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 AC004924.1-201ENST00000480160 781 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 MTCO3P7-201ENST00000510008 774 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 RNU6-927P-201ENST00000516199 100 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 RNU2-10P-201ENST00000516375 211 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 Vault.3-201ENST00000516676 95 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 AC011979.2-201ENST00000527568 352 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 MGST1-215ENST00000540056 546 ntTSL 3 BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 AC006960.3-201ENST00000561845 705 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 MTCYBP33-201ENST00000575007 1130 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 AC002545.1-201ENST00000592511 181 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 AC007619.2-201ENST00000605743 379 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 AC109347.2-201ENST00000610220 349 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 AC008498.1-201ENST00000613012 531 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 MLECP1-201ENST00000615893 709 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 MTND1P37-201ENST00000636562 264 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 CR848007.1-201ENST00000442354 1699 ntBASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CHMP1AQ9HD42 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
CHMP1AQ9HD42 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.9
CHMP1AQ9HD42 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 RPL7P26-201ENST00000333817 754 ntBASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 HSPE1P11-201ENST00000339579 310 ntBASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 RNA5SP424-201ENST00000390988 115 ntBASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 AL136116.1-201ENST00000403591 381 ntBASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 RNA5SP38-201ENST00000410750 119 ntBASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 RAC1P6-201ENST00000423911 575 ntBASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 AC137499.1-201ENST00000427602 88 ntBASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 DLGAP5P1-201ENST00000430307 464 ntBASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 USP9YP14-201ENST00000430663 563 ntBASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 Z74696.2-201ENST00000436514 498 ntBASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC3.15□□□□□ -1.91
CHMP1AQ9HD42 HMGB3P12-201ENST00000438745 556 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 178.8 ms