Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC4.21□□□□□ -1.74
CHMP4AQ9BY43 RNU6-311P-201ENST00000516224 102 ntBASIC4.21□□□□□ -1.74
CHMP4AQ9BY43 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CHMP4AQ9BY43 ZDHHC20P3-201ENST00000531576 336 ntBASIC4.21□□□□□ -1.74
CHMP4AQ9BY43 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC4.21□□□□□ -1.74
CHMP4AQ9BY43 NRBF2P5-201ENST00000603087 788 ntBASIC4.21□□□□□ -1.74
CHMP4AQ9BY43 AC112187.2-201ENST00000604345 283 ntBASIC4.21□□□□□ -1.74
CHMP4AQ9BY43 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC4.21□□□□□ -1.74
CHMP4AQ9BY43 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
CHMP4AQ9BY43 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 ZNF29P-201ENST00000225587 168 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 RNA5SP197-201ENST00000363357 119 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 RNU6-777P-201ENST00000364265 104 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 RN7SKP226-201ENST00000364912 300 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 RNU6-1180P-201ENST00000364935 107 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 RNU6-584P-201ENST00000410350 95 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 AC109583.1-201ENST00000432156 268 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 Z80107.1-201ENST00000436830 412 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 AC108059.3-201ENST00000456388 214 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 AC021678.1-201ENST00000505195 936 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 RNU5A-4P-201ENST00000516588 111 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 RNU4ATAC3P-201ENST00000516699 126 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 RNA5SP290-201ENST00000517133 127 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 AC091057.2-201ENST00000602594 792 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 AC068790.3-201ENST00000602988 553 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 AC007038.2-201ENST00000608095 740 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 AC138932.5-201ENST00000617759 563 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 AC013470.4-201ENST00000619978 986 ntBASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
CHMP4AQ9BY43 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 MTND5P33-201ENST00000571250 1450 ntBASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 AL137003.2-201ENST00000606924 2538 ntBASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 FTLP6-201ENST00000355274 422 ntBASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 RNU1-39P-201ENST00000383897 165 ntBASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 MTCO2P21-201ENST00000419780 677 ntBASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 AC013410.2-201ENST00000422627 201 ntBASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 CST9LP2-201ENST00000437612 320 ntBASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 FAM103A2P-201ENST00000444122 354 ntBASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 AC022447.1-201ENST00000515358 464 ntBASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 VTRNA2-2P-201ENST00000516091 103 ntBASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 AC005476.1-201ENST00000554427 397 ntBASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 DUXAP1-201ENST00000556632 463 ntBASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 AC010546.1-201ENST00000569391 485 ntBASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 AL355598.1-201ENST00000604169 202 ntBASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 MIR7112-201ENST00000616126 65 ntBASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 AC091965.5-201ENST00000624785 342 ntBASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 MIR622-201ENST00000638396 96 ntBASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
CHMP4AQ9BY43 ZNF833P-201ENST00000424938 1494 ntBASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 RNU6-1284P-201ENST00000363701 100 ntBASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 Y_RNA.245-201ENST00000364493 95 ntBASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 RNU6-157P-201ENST00000383957 107 ntBASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 SNORA11.1-201ENST00000408133 129 ntBASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 AC009414.1-201ENST00000427200 443 ntBASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 AC092427.1-202ENST00000430569 476 ntBASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 AL513043.1-201ENST00000439124 535 ntBASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 AL009048.1-201ENST00000450437 298 ntBASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 MRPS17P3-201ENST00000465453 385 ntBASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 RPL36AP51-201ENST00000487216 318 ntBASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 MTCYBP43-201ENST00000513621 740 ntBASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 RNU6-390P-201ENST00000516259 103 ntBASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 SNORA70.24-201ENST00000517233 118 ntBASIC4.18□□□□□ -1.74
CHMP4AQ9BY43 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms