Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
NKX3-1Q99801 SNORD9-201ENST00000362566 104 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 RNU6-76P-201ENST00000384060 104 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 SNORA5A-201ENST00000384111 134 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 RNU6-432P-201ENST00000384196 109 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.01□□□□□ -1.93
NKX3-1Q99801 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.01□□□□□ -1.93
NKX3-1Q99801 RNU6-55P-201ENST00000411092 107 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 RNU6-954P-201ENST00000411355 107 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 HMGN1P24-201ENST00000412282 298 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC3.01□□□□□ -1.93
NKX3-1Q99801 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.01□□□□□ -1.93
NKX3-1Q99801 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.01□□□□□ -1.93
NKX3-1Q99801 ISCA1P6-201ENST00000427740 390 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 YME1L1P1-201ENST00000429435 297 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.01□□□□□ -1.93
NKX3-1Q99801 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.01□□□□□ -1.93
NKX3-1Q99801 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.01□□□□□ -1.93
NKX3-1Q99801 AC009961.2-201ENST00000435771 251 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.01□□□□□ -1.93
NKX3-1Q99801 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.01□□□□□ -1.93
NKX3-1Q99801 AC010401.1-201ENST00000463867 348 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.01□□□□□ -1.93
NKX3-1Q99801 AC082651.2-201ENST00000496833 166 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 AC104619.4-201ENST00000510773 249 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 Y_RNA.655-201ENST00000515919 96 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 SNORA18.6-201ENST00000516792 115 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.01□□□□□ -1.93
NKX3-1Q99801 AC037471.2-201ENST00000564941 598 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 SNORD84-203ENST00000584275 78 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.01□□□□□ -1.93
NKX3-1Q99801 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.01□□□□□ -1.93
NKX3-1Q99801 BDH2P1-201ENST00000602288 736 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 AC008739.3-201ENST00000603262 127 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 AP000860.1-201ENST00000605250 559 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 AC121334.2-201ENST00000605387 271 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 TUG1_2.1-201ENST00000614234 87 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 AP001506.1-201ENST00000615444 211 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 AC108479.2-201ENST00000617314 601 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 AC244100.1-202ENST00000621554 382 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 AC012442.3-202ENST00000636742 206 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
NKX3-1Q99801 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.01□□□□□ -1.93
NKX3-1Q99801 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
NKX3-1Q99801 AC118273.1-201ENST00000525324 3006 ntBASIC3.01□□□□□ -1.93
NKX3-1Q99801 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
NKX3-1Q99801 AL672296.1-201ENST00000427780 2158 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
NKX3-1Q99801 GNG5P1-201ENST00000255500 204 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 RNU5E-1-201ENST00000362477 120 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 RNA5SP197-201ENST00000363357 119 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 RNU5A-8P-201ENST00000364102 114 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 SNORA23-201ENST00000365128 182 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 RNY3P13-201ENST00000365542 102 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3□□□□□ -1.93
NKX3-1Q99801 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
NKX3-1Q99801 EI24P2-201ENST00000397776 1076 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 RNU2-71P-201ENST00000411395 189 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 RPS29P4-201ENST00000414733 161 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3□□□□□ -1.93
NKX3-1Q99801 BX295541.1-201ENST00000417774 250 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 RPS15AP12-201ENST00000419498 388 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3□□□□□ -1.93
NKX3-1Q99801 TRIM60P10Y-201ENST00000425589 751 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3□□□□□ -1.93
NKX3-1Q99801 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3□□□□□ -1.93
NKX3-1Q99801 AC104850.1-201ENST00000435940 476 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 TRIM60P8Y-201ENST00000436338 762 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3□□□□□ -1.93
NKX3-1Q99801 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3□□□□□ -1.93
NKX3-1Q99801 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC3□□□□□ -1.93
NKX3-1Q99801 AL358232.1-201ENST00000448030 501 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3□□□□□ -1.93
NKX3-1Q99801 MTND1P27-201ENST00000451117 902 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 AC006539.3-201ENST00000454258 129 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 SNRPFP4-201ENST00000456366 242 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 HMGN2P16-201ENST00000456802 261 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 snoU109.1-201ENST00000459339 135 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 AC108860.1-201ENST00000484521 383 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 RPL23AP41-201ENST00000484754 458 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3□□□□□ -1.93
NKX3-1Q99801 LAMTOR3P2-201ENST00000504479 232 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 AC010587.1-201ENST00000505809 469 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3□□□□□ -1.93
NKX3-1Q99801 RN7SKP18-201ENST00000516005 275 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 Y_RNA.672-201ENST00000516289 104 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 RNU1-95P-201ENST00000516357 160 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 RNU1-128P-201ENST00000516704 160 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 RNU6-579P-201ENST00000516879 102 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 RNU6-64P-201ENST00000517119 105 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3□□□□□ -1.93
NKX3-1Q99801 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3□□□□□ -1.93
NKX3-1Q99801 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3□□□□□ -1.93
NKX3-1Q99801 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3□□□□□ -1.93
NKX3-1Q99801 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3□□□□□ -1.93
NKX3-1Q99801 AC005951.2-201ENST00000576282 495 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 MIR5187-201ENST00000583479 76 ntBASIC3□□□□□ -1.93
NKX3-1Q99801 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3□□□□□ -1.93
NKX3-1Q99801 BNIP3P22-201ENST00000593399 556 ntBASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 196.8 ms