Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RPL21P24-201ENST00000413752 448 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AL645937.1-202ENST00000421799 937 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC007283.2-201ENST00000424739 197 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 Z82205.1-201ENST00000428456 297 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 GTF2IP13-201ENST00000438487 386 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 RPL21P133-201ENST00000443666 476 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC008481.1-201ENST00000463278 396 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 RPL21P126-201ENST00000470049 478 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 RN7SL817P-201ENST00000480777 288 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC012158.1-204ENST00000483430 465 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC108860.1-201ENST00000484521 383 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC026979.1-201ENST00000492525 396 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC146944.2-203ENST00000502493 354 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC021146.2-201ENST00000504736 556 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC139495.1-202ENST00000513164 354 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC114797.1-201ENST00000514003 728 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 RNU4-49P-201ENST00000516080 140 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 Y_RNA.711-201ENST00000516993 102 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 RNU6-1314P-201ENST00000517139 104 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC105129.1-201ENST00000560250 297 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC006116.10-201ENST00000591836 581 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 AC104237.2-201ENST00000612456 443 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 TTK-211ENST00000627129 240 ntTSL 5 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 RAD17P1-201ENST00000418130 2042 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 MTND5P16-201ENST00000460269 1703 ntBASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
CLIP3Q96DZ5 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AC092435.4-201ENST00000623012 4159 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AC021146.4-201ENST00000309229 279 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 MIR369-201ENST00000362155 70 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 U3.11-201ENST00000364476 212 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 RNU6-108P-201ENST00000365558 107 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 Y_RNA.384-201ENST00000383909 102 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 Y_RNA.387-201ENST00000383918 102 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 MIR93-201ENST00000385024 80 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 RPL5P18-201ENST00000406671 891 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 RNU2-9P-201ENST00000410194 145 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 ELOCP19-201ENST00000411919 318 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 RPL7AP25-201ENST00000423357 805 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 CKS1BP6-201ENST00000424932 240 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AC011998.1-201ENST00000433403 117 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AC108059.2-201ENST00000434626 151 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 RPL23AP93-201ENST00000440847 484 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 BNIP3P2-201ENST00000441221 577 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 HMGN2P26-201ENST00000463169 339 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 MRPS17P3-201ENST00000465453 385 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AL049714.1-201ENST00000466686 347 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 EIF4EP3-201ENST00000498782 656 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 RPL38P4-201ENST00000502376 214 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 SNORA31.8-201ENST00000516327 108 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 IGLVIV-65-201ENST00000517313 360 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 IGKV2D-23-201ENST00000518179 286 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AC090572.1-201ENST00000519251 160 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AC022616.3-201ENST00000523940 148 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 MED28P6-201ENST00000558776 231 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 MIR4293-201ENST00000584305 78 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AF038458.1-201ENST00000588406 262 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AC008737.2-201ENST00000599446 118 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AC010591.1-201ENST00000603941 649 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AC103710.2-201ENST00000609912 942 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AC006020.1-201ENST00000420179 1854 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 AC116667.1-201ENST00000604855 2072 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 MARK2P15-201ENST00000432204 2186 ntBASIC4.36□□□□□ -1.71
CLIP3Q96DZ5 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 124.8 ms