Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 RNA5SP51-201ENST00000364750 119 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 SNORD66.1-201ENST00000391230 76 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 AMD1P2-201ENST00000412936 992 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 JKAMPP1-201ENST00000413804 919 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 ZNF90P2-204ENST00000419323 1075 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 RPL30P16-201ENST00000419341 429 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 RPS12P23-201ENST00000419579 400 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 AL358472.1-201ENST00000431295 329 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 RPL23AP30-201ENST00000432419 501 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 RPL7P28-201ENST00000437739 740 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 BNIP3P2-201ENST00000441221 577 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 RPS3AP46-201ENST00000448352 682 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 RAD23BP3-201ENST00000454157 1152 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 RPS3AP50-201ENST00000487064 803 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 AC093278.1-201ENST00000494700 600 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 RNU6-1095P-201ENST00000516148 108 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 EIF4BP1-201ENST00000554881 351 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 GNRHR2P1-201ENST00000555315 631 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 NCAPGP2-201ENST00000557911 754 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 AC010653.1-201ENST00000571108 881 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 GLUD1P4-201ENST00000590914 418 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 AC025449.1-201ENST00000603896 529 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 MIR432-201ENST00000606207 94 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 AC093838.1-201ENST00000613014 469 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 MIR6715A-201ENST00000615929 79 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 AC006065.5-201ENST00000623427 349 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 CR848007.1-201ENST00000442354 1699 ntBASIC4.7□□□□□ -1.66
SMC1BQ8NDV3 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 RNA5SP151-201ENST00000365632 117 ntBASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 RNU6-754P-201ENST00000391166 107 ntBASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 RNU6-712P-201ENST00000410558 100 ntBASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AL109913.1-201ENST00000421173 514 ntBASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AC083798.1-201ENST00000472671 131 ntBASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AC135721.1-201ENST00000497954 479 ntBASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AC026801.2-201ENST00000515352 425 ntBASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 RNU7-51P-201ENST00000516560 62 ntBASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 NRON-201ENST00000517270 370 ntBASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AC010201.1-201ENST00000605051 540 ntBASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 YPEL5P2-201ENST00000605553 359 ntBASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AL020991.1-201ENST00000612314 373 ntBASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AL359757.2-201ENST00000624309 274 ntBASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AC090337.1-201ENST00000579651 2074 ntBASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
SMC1BQ8NDV3 AL356489.2-201ENST00000566968 3528 ntBASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 SRP72P2-201ENST00000344851 1979 ntBASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 HSPE1P11-201ENST00000339579 310 ntBASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 AL109755.1-201ENST00000401791 649 ntBASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 RPS3AP24-201ENST00000407896 734 ntBASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 RNU2-9P-201ENST00000410194 145 ntBASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 RNU4-65P-201ENST00000410473 140 ntBASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 AL161631.1-201ENST00000417933 486 ntBASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 AC004552.1-201ENST00000419089 348 ntBASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 AC073063.1-201ENST00000434352 607 ntBASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 SEPT14P3-201ENST00000439401 183 ntBASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 CALM1P1-201ENST00000442082 433 ntBASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 AL732372.2-207ENST00000445840 183 ntBASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 FDX1P2-201ENST00000450769 375 ntBASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 SEPT14P2-201ENST00000453405 183 ntBASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 RNU6-420P-201ENST00000458780 107 ntBASIC4.68□□□□□ -1.66
SMC1BQ8NDV3 RNU6-261P-201ENST00000459506 102 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms