Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
UBE3DQ7Z6J8 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AC032011.1-201ENST00000611703 1549 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AC138393.1-203ENST00000327086 343 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 OR56A5-201ENST00000340110 738 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 RN7SKP104-201ENST00000362605 328 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 RNA5SP123-201ENST00000363244 119 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 Y_RNA.518-201ENST00000384552 113 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AL109941.1-201ENST00000401925 229 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 U3.35-201ENST00000408405 208 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 MIR1302-6-201ENST00000408466 90 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 RNU6-607P-201ENST00000411283 108 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 RPL21P90-201ENST00000415692 466 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 GEMIN8P3-201ENST00000445417 720 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AC000111.2-201ENST00000448200 210 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 OR1H1P-201ENST00000448731 937 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 SUMO1P2-201ENST00000452524 304 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 RPS24P6-201ENST00000452670 400 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AP000942.1-201ENST00000463969 747 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 RN7SL515P-201ENST00000463999 297 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 RN7SL97P-201ENST00000486780 299 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AC069499.1-201ENST00000489433 509 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AC018437.1-201ENST00000492214 406 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AC083829.1-201ENST00000503756 657 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 ACA59.1-201ENST00000515966 143 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AP006245.2-201ENST00000522004 300 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AL390726.5-202ENST00000564800 256 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 MIR5188-201ENST00000583467 113 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 MIR548AC-201ENST00000585049 88 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 RNU6-85P-201ENST00000605989 107 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AL022401.1-201ENST00000619498 108 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 CCT5-215ENST00000625723 135 ntTSL 5 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AC233263.6-201ENST00000631132 1963 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 AL138820.1-201ENST00000617901 5305 ntBASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
UBE3DQ7Z6J8 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 SCARNA15-201ENST00000607520 4325 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 RN7SKP95-201ENST00000362860 303 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 RNU6-288P-201ENST00000363690 104 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 RNU4-42P-201ENST00000364738 142 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 RNU6-209P-201ENST00000384118 107 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 Y_RNA.512-201ENST00000384518 102 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 RNU6-1156P-201ENST00000410365 100 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 RNU6-712P-201ENST00000410558 100 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 AL030996.1-201ENST00000411430 235 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 TBCAP2-201ENST00000416175 326 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 BX842559.1-201ENST00000419615 532 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 RBMY1KP-201ENST00000423480 476 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 UBE2D3P2-201ENST00000424409 445 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 SUMO1P3-201ENST00000439961 304 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 RPL23AP56-201ENST00000460778 453 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 RN7SL517P-201ENST00000462240 305 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 RPL7AP6-201ENST00000477943 801 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 RN7SL591P-201ENST00000496150 292 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 RNU6-1023P-201ENST00000516137 106 ntBASIC4.68□□□□□ -1.66
UBE3DQ7Z6J8 RNU6-914P-201ENST00000516749 109 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 235.2 ms