Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 FGF7P8-201ENST00000402994 292 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AL359704.1-201ENST00000411586 781 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 TOMM22P1-201ENST00000418578 312 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 RPL21P66-201ENST00000426566 466 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AC133104.1-201ENST00000429100 218 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AC073464.1-201ENST00000429823 534 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 MTND2P24-201ENST00000453434 806 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 snoU13.8-201ENST00000458890 104 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 snoU13.24-201ENST00000458998 104 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 HMGB1P25-201ENST00000468402 607 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AC010285.1-201ENST00000470580 392 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AC092989.1-201ENST00000481235 277 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 HMGB1P22-201ENST00000505315 124 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 RN7SKP13-201ENST00000515933 244 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AC026403.1-201ENST00000518938 295 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AP006245.1-201ENST00000522549 120 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AL157687.1-201ENST00000554853 619 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 BNIP3P30-201ENST00000601184 574 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AC006077.1-201ENST00000604746 343 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AC245389.1-201ENST00000605141 529 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AC006023.2-201ENST00000609916 167 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AC009093.8-201ENST00000641769 292 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 AC092125.1-201ENST00000562568 1995 ntBASIC4.3□□□□□ -1.72
VPS53Q5VIR6 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
VPS53Q5VIR6 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 Y_RNA.1-201ENST00000352915 104 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 Y_RNA.234-201ENST00000364409 97 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 RNU6-359P-201ENST00000365466 108 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 RNU6-712P-201ENST00000410558 100 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 RPL31P35-201ENST00000431058 377 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 EZH2P1-201ENST00000431167 291 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 FCF1P1-201ENST00000432690 571 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC002486.1-201ENST00000435098 391 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 HMGB1P31-201ENST00000437242 427 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC108734.1-201ENST00000439549 399 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC132479.1-201ENST00000449160 144 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC010655.1-201ENST00000449336 292 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 RPL21P104-201ENST00000464143 478 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC106707.2-201ENST00000484182 374 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC068305.1-201ENST00000497406 726 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AP003034.1-201ENST00000534621 422 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AL512310.1-201ENST00000548639 172 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 CBX3P5-201ENST00000552017 521 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC007363.1-201ENST00000604736 620 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC110741.2-201ENST00000605278 268 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC121334.2-201ENST00000605387 271 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC017083.3-201ENST00000609955 700 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC025253.1-201ENST00000613623 543 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC006338.1-201ENST00000618453 749 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 U7.8-201ENST00000619968 63 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC048347.1-201ENST00000624621 427 ntBASIC4.29□□□□□ -1.72
VPS53Q5VIR6 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
VPS53Q5VIR6 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS53Q5VIR6 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
VPS53Q5VIR6 Y_RNA.303-201ENST00000364998 94 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.28□□□□□ -1.72
VPS53Q5VIR6 Y_RNA.573-201ENST00000384763 105 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 PTMAP2-201ENST00000397627 327 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 HSPE1P26-201ENST00000405341 275 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 U3.39-201ENST00000408569 239 ntBASIC4.28□□□□□ -1.72
VPS53Q5VIR6 AC127526.1-201ENST00000417526 366 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms