Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 FO393413.1-201ENST00000402892 195 ntBASIC2.13□□□□□ -2.07
CUX1P39880 RNU2-25P-201ENST00000411041 191 ntBASIC2.13□□□□□ -2.07
CUX1P39880 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
CUX1P39880 RPL23AP41-201ENST00000484754 458 ntBASIC2.13□□□□□ -2.07
CUX1P39880 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.13□□□□□ -2.07
CUX1P39880 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.13□□□□□ -2.07
CUX1P39880 AC025016.1-201ENST00000616746 682 ntBASIC2.13□□□□□ -2.07
CUX1P39880 AC121761.2-201ENST00000617300 689 ntBASIC2.13□□□□□ -2.07
CUX1P39880 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
CUX1P39880 RNU6-203P-201ENST00000384038 104 ntBASIC2.12□□□□□ -2.07
CUX1P39880 RNU6-1032P-201ENST00000384100 107 ntBASIC2.12□□□□□ -2.07
CUX1P39880 FABP5P3-201ENST00000437960 408 ntBASIC2.12□□□□□ -2.07
CUX1P39880 RPL17P49-201ENST00000443728 411 ntBASIC2.12□□□□□ -2.07
CUX1P39880 AC010683.1-201ENST00000473673 378 ntBASIC2.12□□□□□ -2.07
CUX1P39880 AC113155.1-201ENST00000511141 769 ntBASIC2.12□□□□□ -2.07
CUX1P39880 RNU6-347P-201ENST00000516658 105 ntBASIC2.12□□□□□ -2.07
CUX1P39880 SNORD59.2-201ENST00000516873 68 ntBASIC2.12□□□□□ -2.07
CUX1P39880 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC2.12□□□□□ -2.07
CUX1P39880 AP000907.2-201ENST00000530827 353 ntBASIC2.12□□□□□ -2.07
CUX1P39880 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.12□□□□□ -2.07
CUX1P39880 FAM106DP-201ENST00000586416 501 ntBASIC2.12□□□□□ -2.07
CUX1P39880 DUXAP4-201ENST00000603046 613 ntBASIC2.12□□□□□ -2.07
CUX1P39880 AC083806.3-201ENST00000614016 455 ntBASIC2.12□□□□□ -2.07
CUX1P39880 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.12□□□□□ -2.07
CUX1P39880 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
CUX1P39880 AL136520.1-201ENST00000600311 1322 ntBASIC2.12□□□□□ -2.07
CUX1P39880 MIR548J-201ENST00000408833 112 ntBASIC2.12□□□□□ -2.07
CUX1P39880 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC2.12□□□□□ -2.07
CUX1P39880 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC2.12□□□□□ -2.07
CUX1P39880 UBBP3-201ENST00000445497 241 ntBASIC2.12□□□□□ -2.07
CUX1P39880 AC008837.2-201ENST00000513076 418 ntBASIC2.12□□□□□ -2.07
CUX1P39880 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC2.12□□□□□ -2.07
CUX1P39880 AF279873.1-201ENST00000523393 313 ntBASIC2.12□□□□□ -2.07
CUX1P39880 NOP56P3-201ENST00000549457 385 ntBASIC2.12□□□□□ -2.07
CUX1P39880 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.12□□□□□ -2.07
CUX1P39880 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.12□□□□□ -2.07
CUX1P39880 AK6-205ENST00000618980 483 ntTSL 2 BASIC2.12□□□□□ -2.07
CUX1P39880 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.11□□□□□ -2.07
CUX1P39880 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
CUX1P39880 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC2.11□□□□□ -2.07
CUX1P39880 AL033519.2-201ENST00000403958 392 ntBASIC2.11□□□□□ -2.07
CUX1P39880 AC096992.1-201ENST00000459808 709 ntBASIC2.11□□□□□ -2.07
CUX1P39880 AC010625.1-201ENST00000511296 403 ntBASIC2.11□□□□□ -2.07
CUX1P39880 AC068714.1-201ENST00000559623 800 ntBASIC2.11□□□□□ -2.07
CUX1P39880 AC013553.2-201ENST00000604244 589 ntBASIC2.11□□□□□ -2.07
CUX1P39880 HSPE1P14-201ENST00000605812 302 ntBASIC2.11□□□□□ -2.07
CUX1P39880 AC140725.3-201ENST00000616193 880 ntBASIC2.11□□□□□ -2.07
CUX1P39880 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.11□□□□□ -2.07
CUX1P39880 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
CUX1P39880 RNU2-32P-201ENST00000411193 191 ntBASIC2.1□□□□□ -2.07
CUX1P39880 AC244033.1-201ENST00000426826 870 ntBASIC2.1□□□□□ -2.07
CUX1P39880 AC068135.2-201ENST00000569293 1028 ntBASIC2.1□□□□□ -2.07
CUX1P39880 AC097468.3-201ENST00000607956 456 ntBASIC2.1□□□□□ -2.07
CUX1P39880 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.1□□□□□ -2.07
CUX1P39880 MTND5P10-201ENST00000603719 1809 ntBASIC2.1□□□□□ -2.07
CUX1P39880 RPS6P14-201ENST00000425165 719 ntBASIC2.09□□□□□ -2.07
CUX1P39880 MTND5P25-201ENST00000430499 799 ntBASIC2.09□□□□□ -2.07
CUX1P39880 AL121839.1-201ENST00000556233 1185 ntBASIC2.09□□□□□ -2.07
CUX1P39880 AL109653.1-201ENST00000603091 248 ntBASIC2.09□□□□□ -2.07
CUX1P39880 AC109780.2-201ENST00000413467 845 ntBASIC2.08□□□□□ -2.08
CUX1P39880 PRELID3BP11-201ENST00000414230 479 ntBASIC2.08□□□□□ -2.08
CUX1P39880 ELOCP6-201ENST00000429066 328 ntBASIC2.08□□□□□ -2.08
CUX1P39880 LSM1P1-201ENST00000438629 273 ntBASIC2.08□□□□□ -2.08
CUX1P39880 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.08□□□□□ -2.08
CUX1P39880 ELOCP12-201ENST00000458706 328 ntBASIC2.08□□□□□ -2.08
CUX1P39880 FABP5P5-201ENST00000515537 406 ntBASIC2.08□□□□□ -2.08
CUX1P39880 RN7SKP5-201ENST00000517045 272 ntBASIC2.08□□□□□ -2.08
CUX1P39880 RNU6-711P-201ENST00000517255 106 ntBASIC2.08□□□□□ -2.08
CUX1P39880 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
CUX1P39880 AC016727.2-201ENST00000603988 621 ntBASIC2.08□□□□□ -2.08
CUX1P39880 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC2.08□□□□□ -2.08
CUX1P39880 AC068700.1-201ENST00000565862 3754 ntBASIC2.08□□□□□ -2.08
CUX1P39880 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.08□□□□□ -2.08
CUX1P39880 RNU6-1180P-201ENST00000364935 107 ntBASIC2.07□□□□□ -2.08
CUX1P39880 Y_RNA.393-201ENST00000383936 102 ntBASIC2.07□□□□□ -2.08
CUX1P39880 RPL30P3-201ENST00000424262 333 ntBASIC2.07□□□□□ -2.08
CUX1P39880 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.07□□□□□ -2.08
CUX1P39880 RPPH1-2P-201ENST00000516688 293 ntBASIC2.07□□□□□ -2.08
CUX1P39880 OR5AQ1P-201ENST00000527596 927 ntBASIC2.07□□□□□ -2.08
CUX1P39880 MTND2P13-201ENST00000577438 1039 ntBASIC2.07□□□□□ -2.08
CUX1P39880 AC007229.1-201ENST00000590455 412 ntBASIC2.07□□□□□ -2.08
CUX1P39880 AC073413.2-201ENST00000604332 360 ntBASIC2.07□□□□□ -2.08
CUX1P39880 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC2.07□□□□□ -2.08
CUX1P39880 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
CUX1P39880 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.07□□□□□ -2.08
CUX1P39880 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
CUX1P39880 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC2.07□□□□□ -2.08
CUX1P39880 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
CUX1P39880 MIR222-201ENST00000384992 110 ntBASIC2.07□□□□□ -2.08
CUX1P39880 RPL21P104-201ENST00000464143 478 ntBASIC2.07□□□□□ -2.08
CUX1P39880 BZW1P2-201ENST00000473537 826 ntBASIC2.07□□□□□ -2.08
CUX1P39880 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC2.07□□□□□ -2.08
CUX1P39880 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.07□□□□□ -2.08
CUX1P39880 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.07□□□□□ -2.08
CUX1P39880 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
CUX1P39880 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC2.07□□□□□ -2.08
CUX1P39880 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC2.06□□□□□ -2.08
CUX1P39880 MORF4L1P7-201ENST00000426038 703 ntBASIC2.06□□□□□ -2.08
CUX1P39880 TRIM60P13-201ENST00000432350 1283 ntBASIC2.06□□□□□ -2.08
CUX1P39880 AC109446.2-201ENST00000567872 497 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms