Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC4.21□□□□□ -1.74
MSX2P35548 AL713922.2-201ENST00000619384 716 ntBASIC4.21□□□□□ -1.74
MSX2P35548 AC091925.1-201ENST00000623204 462 ntBASIC4.21□□□□□ -1.74
MSX2P35548 AC025034.2-201ENST00000623264 286 ntBASIC4.21□□□□□ -1.74
MSX2P35548 U3.53-201ENST00000628922 216 ntBASIC4.21□□□□□ -1.74
MSX2P35548 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.21□□□□□ -1.74
MSX2P35548 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.21□□□□□ -1.74
MSX2P35548 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.74
MSX2P35548 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
MSX2P35548 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.74
MSX2P35548 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
MSX2P35548 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.74
MSX2P35548 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
MSX2P35548 IQCB2P-201ENST00000401788 1633 ntBASIC4.21□□□□□ -1.74
MSX2P35548 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
MSX2P35548 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.2□□□□□ -1.74
MSX2P35548 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
MSX2P35548 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.2□□□□□ -1.74
MSX2P35548 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.2□□□□□ -1.74
MSX2P35548 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSX2P35548 AC021146.4-201ENST00000309229 279 ntBASIC4.2□□□□□ -1.74
MSX2P35548 RNA5SP388-201ENST00000362584 119 ntBASIC4.2□□□□□ -1.74
MSX2P35548 RNU6-82P-201ENST00000363970 107 ntBASIC4.2□□□□□ -1.74
MSX2P35548 Y_RNA.212-201ENST00000364177 102 ntBASIC4.2□□□□□ -1.74
MSX2P35548 RNU6-188P-201ENST00000364207 107 ntBASIC4.2□□□□□ -1.74
MSX2P35548 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
MSX2P35548 MIR1250-201ENST00000408098 113 ntBASIC4.2□□□□□ -1.74
MSX2P35548 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.2□□□□□ -1.74
MSX2P35548 Y_RNA.605-201ENST00000410577 105 ntBASIC4.2□□□□□ -1.74
MSX2P35548 RNA5SP104-201ENST00000410989 118 ntBASIC4.2□□□□□ -1.74
MSX2P35548 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.2□□□□□ -1.74
MSX2P35548 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC4.2□□□□□ -1.74
MSX2P35548 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.2□□□□□ -1.74
MSX2P35548 RPL23AP38-201ENST00000423801 469 ntBASIC4.2□□□□□ -1.74
MSX2P35548 SKA2P1-201ENST00000425592 390 ntBASIC4.2□□□□□ -1.74
MSX2P35548 RPS12P10-201ENST00000427031 377 ntBASIC4.2□□□□□ -1.74
MSX2P35548 AC005019.1-201ENST00000436455 431 ntBASIC4.2□□□□□ -1.74
MSX2P35548 AC005094.1-201ENST00000440420 368 ntBASIC4.2□□□□□ -1.74
MSX2P35548 Z95327.1-201ENST00000446082 482 ntBASIC4.2□□□□□ -1.74
MSX2P35548 NDUFS5P3-201ENST00000450668 321 ntBASIC4.2□□□□□ -1.74
MSX2P35548 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.2□□□□□ -1.74
MSX2P35548 AC133473.1-201ENST00000455173 299 ntBASIC4.2□□□□□ -1.74
MSX2P35548 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.2□□□□□ -1.74
MSX2P35548 NDUFB5P1-201ENST00000508134 564 ntBASIC4.2□□□□□ -1.74
MSX2P35548 AC098591.2-201ENST00000510152 315 ntBASIC4.2□□□□□ -1.74
MSX2P35548 MTCO3P44-201ENST00000510977 541 ntBASIC4.2□□□□□ -1.74
MSX2P35548 AC007016.1-201ENST00000512110 244 ntBASIC4.2□□□□□ -1.74
MSX2P35548 RNA5SP497-201ENST00000516081 97 ntBASIC4.2□□□□□ -1.74
MSX2P35548 RNU6-256P-201ENST00000516747 97 ntBASIC4.2□□□□□ -1.74
MSX2P35548 HIGD1AP5-201ENST00000529959 259 ntBASIC4.2□□□□□ -1.74
MSX2P35548 OR5D15P-201ENST00000531671 942 ntBASIC4.2□□□□□ -1.74
MSX2P35548 AP000763.2-201ENST00000540641 163 ntBASIC4.2□□□□□ -1.74
MSX2P35548 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.2□□□□□ -1.74
MSX2P35548 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.2□□□□□ -1.74
MSX2P35548 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.2□□□□□ -1.74
MSX2P35548 RPL23AP97-201ENST00000568955 471 ntBASIC4.2□□□□□ -1.74
MSX2P35548 MIR4646-201ENST00000580775 63 ntBASIC4.2□□□□□ -1.74
MSX2P35548 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC4.2□□□□□ -1.74
MSX2P35548 AC104662.1-201ENST00000604448 511 ntBASIC4.2□□□□□ -1.74
MSX2P35548 AC007938.3-201ENST00000604965 623 ntBASIC4.2□□□□□ -1.74
MSX2P35548 AC020634.1-201ENST00000608701 549 ntBASIC4.2□□□□□ -1.74
MSX2P35548 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.2□□□□□ -1.74
MSX2P35548 RMST_9.1-201ENST00000619945 193 ntBASIC4.2□□□□□ -1.74
MSX2P35548 AC091925.2-201ENST00000625059 256 ntBASIC4.2□□□□□ -1.74
MSX2P35548 U6.114-201ENST00000636407 96 ntBASIC4.2□□□□□ -1.74
MSX2P35548 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.2□□□□□ -1.74
MSX2P35548 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSX2P35548 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
MSX2P35548 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
MSX2P35548 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
MSX2P35548 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
MSX2P35548 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.2□□□□□ -1.74
MSX2P35548 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.19□□□□□ -1.74
MSX2P35548 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
MSX2P35548 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSX2P35548 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.19□□□□□ -1.74
MSX2P35548 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
MSX2P35548 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSX2P35548 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
MSX2P35548 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSX2P35548 CPHL1P-201ENST00000461341 3407 ntBASIC4.19□□□□□ -1.74
MSX2P35548 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
MSX2P35548 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSX2P35548 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSX2P35548 U3.15-201ENST00000365398 212 ntBASIC4.19□□□□□ -1.74
MSX2P35548 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSX2P35548 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSX2P35548 RNU6-196P-201ENST00000384315 107 ntBASIC4.19□□□□□ -1.74
MSX2P35548 Y_RNA.576-201ENST00000384781 102 ntBASIC4.19□□□□□ -1.74
MSX2P35548 RNU6-907P-201ENST00000390924 102 ntBASIC4.19□□□□□ -1.74
MSX2P35548 RN7SKP267-201ENST00000410381 285 ntBASIC4.19□□□□□ -1.74
MSX2P35548 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.19□□□□□ -1.74
MSX2P35548 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.19□□□□□ -1.74
MSX2P35548 RPL31P12-201ENST00000422587 358 ntBASIC4.19□□□□□ -1.74
MSX2P35548 RPS27AP12-201ENST00000429552 465 ntBASIC4.19□□□□□ -1.74
MSX2P35548 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC4.19□□□□□ -1.74
MSX2P35548 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
MSX2P35548 RPL23AP93-201ENST00000440847 484 ntBASIC4.19□□□□□ -1.74
MSX2P35548 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.19□□□□□ -1.74
MSX2P35548 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms