Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXC9P31274 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXC9P31274 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXC9P31274 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
HOXC9P31274 RNA5SP258-201ENST00000362750 119 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 RNU4-21P-201ENST00000362802 126 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 U3.4-201ENST00000363352 213 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 RPS27AP14-201ENST00000422868 454 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 BX119904.4-201ENST00000424402 301 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 AC006548.1-201ENST00000427470 102 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXC9P31274 TRIM60P18-201ENST00000441518 828 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 BMI1P1-201ENST00000445879 941 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 RPS3P1-201ENST00000456781 192 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 AC022447.3-201ENST00000506865 495 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 TXNP6-201ENST00000510190 310 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXC9P31274 Y_RNA.695-201ENST00000516715 107 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 RNU6-714P-201ENST00000516963 103 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HOXC9P31274 RFPL1S-203ENST00000539579 330 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXC9P31274 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXC9P31274 NBR2-204ENST00000587322 63 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 AP001981.2-201ENST00000603241 418 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 AC012360.2-201ENST00000609349 391 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 AL158063.1-201ENST00000615349 536 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 AL596245.1-201ENST00000618994 362 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 CR381572.1-201ENST00000625098 102 ntBASIC3.72□□□□□ -1.81
HOXC9P31274 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXC9P31274 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXC9P31274 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXC9P31274 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXC9P31274 GABRG2-229ENST00000641017 3628 ntBASIC3.71□□□□□ -1.81
HOXC9P31274 RNU6-1207P-201ENST00000384343 107 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 MIR196B-201ENST00000384852 84 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 AL445529.1-201ENST00000398713 389 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 RNU2-47P-201ENST00000410649 186 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 RN7SKP284-201ENST00000411002 343 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXC9P31274 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXC9P31274 AIMP1P1-201ENST00000418670 937 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXC9P31274 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.71□□□□□ -1.82
HOXC9P31274 COX6CP12-201ENST00000446748 202 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 AL353691.1-201ENST00000451332 387 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 SNRPGP9-201ENST00000456025 225 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 HMGB1P25-201ENST00000468402 607 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXC9P31274 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXC9P31274 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXC9P31274 AC006445.2-201ENST00000510061 472 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXC9P31274 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXC9P31274 RNU2-58P-201ENST00000516403 183 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 AC025881.1-201ENST00000518851 512 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXC9P31274 AC090281.1-201ENST00000523019 276 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXC9P31274 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.71□□□□□ -1.82
HOXC9P31274 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.71□□□□□ -1.82
HOXC9P31274 MIR3124-201ENST00000582636 67 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 MIR548AB-201ENST00000584917 84 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXC9P31274 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXC9P31274 AC055876.5-201ENST00000605667 259 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 AC239868.4-201ENST00000608318 671 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 AC093591.3-201ENST00000634516 308 ntBASIC3.71□□□□□ -1.82
HOXC9P31274 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXC9P31274 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
HOXC9P31274 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXC9P31274 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXC9P31274 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXC9P31274 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.71□□□□□ -1.82
HOXC9P31274 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
HOXC9P31274 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXC9P31274 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXC9P31274 AC008725.1-201ENST00000605123 2263 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 AC006378.2-201ENST00000623178 2476 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 AC092593.1-201ENST00000515413 1815 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXC9P31274 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXC9P31274 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
HOXC9P31274 RNU1-35P-201ENST00000362782 153 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 Y_RNA.77-201ENST00000362962 107 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 RNU6-97P-201ENST00000363387 104 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXC9P31274 RNU6-769P-201ENST00000384407 104 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 RNU6-809P-201ENST00000384461 107 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
HOXC9P31274 AL356057.3-201ENST00000402607 340 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 AL583834.1-201ENST00000406943 343 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 MIR1305-201ENST00000408300 86 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 RN7SKP58-201ENST00000411010 305 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.7□□□□□ -1.82
HOXC9P31274 CYCSP46-201ENST00000423569 204 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXC9P31274 RPL37P21-201ENST00000435890 276 ntBASIC3.7□□□□□ -1.82
HOXC9P31274 RPL23AP22-201ENST00000437556 453 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms