Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
SDC1P18827 ASNSP3-201ENST00000451989 1306 ntBASIC2.74□□□□□ -1.97
SDC1P18827 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.74□□□□□ -1.97
SDC1P18827 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.74□□□□□ -1.97
SDC1P18827 API5P2-201ENST00000397055 1498 ntBASIC2.74□□□□□ -1.97
SDC1P18827 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
SDC1P18827 RNU5A-1-201ENST00000362698 116 ntBASIC2.74□□□□□ -1.97
SDC1P18827 SNORA38.1-201ENST00000364172 131 ntBASIC2.74□□□□□ -1.97
SDC1P18827 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.74□□□□□ -1.97
SDC1P18827 SNORA36C-201ENST00000384289 132 ntBASIC2.74□□□□□ -1.97
SDC1P18827 MIR34B-201ENST00000385076 84 ntBASIC2.74□□□□□ -1.97
SDC1P18827 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
SDC1P18827 AL590004.2-201ENST00000404787 371 ntBASIC2.74□□□□□ -1.97
SDC1P18827 TPMTP3-201ENST00000411928 735 ntBASIC2.74□□□□□ -1.97
SDC1P18827 HMGB1P11-201ENST00000413899 637 ntBASIC2.74□□□□□ -1.97
SDC1P18827 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.74□□□□□ -1.97
SDC1P18827 RPL27AP8-201ENST00000424277 446 ntBASIC2.74□□□□□ -1.97
SDC1P18827 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.74□□□□□ -1.97
SDC1P18827 NDUFB4P6-201ENST00000436819 366 ntBASIC2.74□□□□□ -1.97
SDC1P18827 RPL21P2-201ENST00000440049 481 ntBASIC2.74□□□□□ -1.97
SDC1P18827 RPL17P49-201ENST00000443728 411 ntBASIC2.74□□□□□ -1.97
SDC1P18827 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.74□□□□□ -1.97
SDC1P18827 MTND1P9-201ENST00000453775 944 ntBASIC2.74□□□□□ -1.97
SDC1P18827 HMGN2P13-201ENST00000476476 274 ntBASIC2.74□□□□□ -1.97
SDC1P18827 AC004263.1-201ENST00000479327 332 ntBASIC2.74□□□□□ -1.97
SDC1P18827 LINC00888-204ENST00000487386 421 ntBASIC2.74□□□□□ -1.97
SDC1P18827 RNU6-798P-201ENST00000516912 103 ntBASIC2.74□□□□□ -1.97
SDC1P18827 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.74□□□□□ -1.97
SDC1P18827 AL133271.1-201ENST00000538229 291 ntBASIC2.74□□□□□ -1.97
SDC1P18827 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC2.74□□□□□ -1.97
SDC1P18827 MIR1254-2-201ENST00000579553 63 ntBASIC2.74□□□□□ -1.97
SDC1P18827 AC068313.1-201ENST00000604028 1008 ntBASIC2.74□□□□□ -1.97
SDC1P18827 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.74□□□□□ -1.97
SDC1P18827 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.74□□□□□ -1.97
SDC1P18827 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.74□□□□□ -1.97
SDC1P18827 AC131159.1-201ENST00000621854 213 ntBASIC2.74□□□□□ -1.97
SDC1P18827 AC009268.2-201ENST00000621925 457 ntBASIC2.74□□□□□ -1.97
SDC1P18827 AP000770.2-201ENST00000623694 100 ntBASIC2.74□□□□□ -1.97
SDC1P18827 AC084035.1-201ENST00000634543 607 ntBASIC2.74□□□□□ -1.97
SDC1P18827 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.74□□□□□ -1.97
SDC1P18827 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
SDC1P18827 AC005832.2-201ENST00000538921 1430 ntBASIC2.74□□□□□ -1.97
SDC1P18827 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SDC1P18827 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
SDC1P18827 AC011460.1-201ENST00000636268 1834 ntBASIC2.73□□□□□ -1.97
SDC1P18827 MTND5P33-201ENST00000571250 1450 ntBASIC2.73□□□□□ -1.97
SDC1P18827 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
SDC1P18827 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SDC1P18827 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SDC1P18827 RNU6-516P-201ENST00000411381 104 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.73□□□□□ -1.97
SDC1P18827 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SDC1P18827 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.73□□□□□ -1.97
SDC1P18827 AL390023.1-201ENST00000428836 262 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.73□□□□□ -1.97
SDC1P18827 UBE2V1P13-201ENST00000436983 439 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AC093156.1-201ENST00000440382 670 ntBASIC2.73□□□□□ -1.97
SDC1P18827 TPT1P14-201ENST00000448018 505 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC2.73□□□□□ -1.97
SDC1P18827 BX510359.1-201ENST00000456973 237 ntBASIC2.73□□□□□ -1.97
SDC1P18827 RPL21P8-201ENST00000465083 535 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AL049714.1-201ENST00000466686 347 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AC072039.1-201ENST00000477611 581 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AL049874.1-201ENST00000489560 388 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.73□□□□□ -1.97
SDC1P18827 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SDC1P18827 AL359273.1-201ENST00000510918 627 ntBASIC2.73□□□□□ -1.97
SDC1P18827 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.73□□□□□ -1.97
SDC1P18827 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.73□□□□□ -1.97
SDC1P18827 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SDC1P18827 AP000857.1-201ENST00000532151 543 ntBASIC2.73□□□□□ -1.97
SDC1P18827 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
SDC1P18827 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.73□□□□□ -1.97
SDC1P18827 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC2.73□□□□□ -1.97
SDC1P18827 AC107016.2-201ENST00000547968 190 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC2.73□□□□□ -1.97
SDC1P18827 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.73□□□□□ -1.97
SDC1P18827 AL158211.1-201ENST00000566763 763 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AC078899.3-201ENST00000599065 212 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AL133393.1-201ENST00000603277 287 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AC107214.2-201ENST00000608204 634 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AC069200.1-201ENST00000609511 323 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AC107871.2-201ENST00000612894 502 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AC090132.2-201ENST00000615881 347 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AC002076.2-201ENST00000617362 122 ntBASIC2.73□□□□□ -1.97
SDC1P18827 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
SDC1P18827 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
SDC1P18827 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
SDC1P18827 AC103988.1-201ENST00000566382 2177 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AC006378.2-201ENST00000623178 2476 ntBASIC2.73□□□□□ -1.97
SDC1P18827 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC2.72□□□□□ -1.97
SDC1P18827 U8.9-201ENST00000365667 134 ntBASIC2.72□□□□□ -1.97
SDC1P18827 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
SDC1P18827 TAS2R15P-201ENST00000390674 928 ntBASIC2.72□□□□□ -1.97
SDC1P18827 SNORA26.7-201ENST00000391288 122 ntBASIC2.72□□□□□ -1.97
SDC1P18827 SNORD88.1-201ENST00000408684 91 ntBASIC2.72□□□□□ -1.97
SDC1P18827 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC2.72□□□□□ -1.97
SDC1P18827 AL359704.1-201ENST00000411586 781 ntBASIC2.72□□□□□ -1.97
SDC1P18827 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.72□□□□□ -1.97
SDC1P18827 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms