Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
HMGB1P09429 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.47□□□□□ -1.69
HMGB1P09429 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HMGB1P09429 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
HMGB1P09429 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
HMGB1P09429 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.46□□□□□ -1.69
HMGB1P09429 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC4.46□□□□□ -1.69
HMGB1P09429 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
HMGB1P09429 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
HMGB1P09429 Y_RNA.169-201ENST00000363745 96 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC4.46□□□□□ -1.7
HMGB1P09429 Z99497.1-201ENST00000421282 135 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 AL365203.2-201ENST00000423444 196 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 AL356583.2-201ENST00000426536 280 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 AC004975.1-201ENST00000428733 208 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 RNA5SP208-201ENST00000516156 78 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 RNU2-10P-201ENST00000516375 211 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 RNU1-103P-201ENST00000516502 125 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 AC106038.2-201ENST00000520706 568 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 AC022695.1-201ENST00000522089 237 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.46□□□□□ -1.7
HMGB1P09429 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.46□□□□□ -1.7
HMGB1P09429 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC4.46□□□□□ -1.7
HMGB1P09429 AC011979.2-201ENST00000527568 352 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 AP003181.2-201ENST00000528941 181 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 AL359212.1-201ENST00000556608 614 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC4.46□□□□□ -1.7
HMGB1P09429 AC145350.1-201ENST00000567426 208 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC4.46□□□□□ -1.7
HMGB1P09429 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC4.46□□□□□ -1.7
HMGB1P09429 AC067852.3-201ENST00000589177 561 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 AC024220.1-201ENST00000603675 484 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 RNU6-87P-201ENST00000607561 108 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 MIR6875-201ENST00000617506 72 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 AL354798.1-201ENST00000622505 329 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 FP236240.3-201ENST00000623061 327 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
HMGB1P09429 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
HMGB1P09429 ZNF519P1-201ENST00000449011 1626 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 ATP8A2P3-201ENST00000426792 1536 ntBASIC4.46□□□□□ -1.7
HMGB1P09429 AC138915.1-201ENST00000565427 1685 ntBASIC4.45□□□□□ -1.7
HMGB1P09429 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.45□□□□□ -1.7
HMGB1P09429 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
HMGB1P09429 RNU1-18P-201ENST00000363062 164 ntBASIC4.45□□□□□ -1.7
HMGB1P09429 CD2-201ENST00000369477 478 ntTSL 2 BASIC4.45□□□□□ -1.7
HMGB1P09429 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
HMGB1P09429 SETP8-201ENST00000435341 628 ntBASIC4.45□□□□□ -1.7
HMGB1P09429 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC4.45□□□□□ -1.7
HMGB1P09429 RPL37P4-201ENST00000448908 268 ntBASIC4.45□□□□□ -1.7
HMGB1P09429 RN7SL132P-201ENST00000478131 296 ntBASIC4.45□□□□□ -1.7
HMGB1P09429 RPS27AP10-201ENST00000496103 208 ntBASIC4.45□□□□□ -1.7
HMGB1P09429 SCARNA14-201ENST00000516903 136 ntBASIC4.45□□□□□ -1.7
HMGB1P09429 RNU6-143P-201ENST00000516942 93 ntBASIC4.45□□□□□ -1.7
HMGB1P09429 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HMGB1P09429 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.45□□□□□ -1.7
HMGB1P09429 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.45□□□□□ -1.7
HMGB1P09429 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC4.45□□□□□ -1.7
HMGB1P09429 AC109446.2-201ENST00000567872 497 ntBASIC4.45□□□□□ -1.7
HMGB1P09429 AC119501.1-201ENST00000603646 475 ntBASIC4.45□□□□□ -1.7
HMGB1P09429 AC092354.1-201ENST00000606057 376 ntBASIC4.45□□□□□ -1.7
HMGB1P09429 AC079684.1-201ENST00000621405 437 ntBASIC4.45□□□□□ -1.7
HMGB1P09429 AC244205.2-202ENST00000635781 342 ntBASIC4.45□□□□□ -1.7
HMGB1P09429 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
HMGB1P09429 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
HMGB1P09429 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
HMGB1P09429 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
HMGB1P09429 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
HMGB1P09429 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HMGB1P09429 U3.11-201ENST00000364476 212 ntBASIC4.44□□□□□ -1.7
HMGB1P09429 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HMGB1P09429 RNU1-73P-201ENST00000383971 164 ntBASIC4.44□□□□□ -1.7
HMGB1P09429 AL122016.1-201ENST00000403365 367 ntBASIC4.44□□□□□ -1.7
HMGB1P09429 AC023141.4-201ENST00000412031 328 ntBASIC4.44□□□□□ -1.7
HMGB1P09429 NDUFS5P4-201ENST00000412983 318 ntBASIC4.44□□□□□ -1.7
HMGB1P09429 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.44□□□□□ -1.7
HMGB1P09429 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC4.44□□□□□ -1.7
HMGB1P09429 NUTF2P7-201ENST00000453086 375 ntBASIC4.44□□□□□ -1.7
HMGB1P09429 APOOP4-201ENST00000513530 597 ntBASIC4.44□□□□□ -1.7
HMGB1P09429 RN7SKP60-201ENST00000516985 239 ntBASIC4.44□□□□□ -1.7
HMGB1P09429 PAICSP4-201ENST00000517543 1253 ntBASIC4.44□□□□□ -1.7
HMGB1P09429 AL121766.1-201ENST00000547436 487 ntBASIC4.44□□□□□ -1.7
HMGB1P09429 RPS3AP4-201ENST00000555161 764 ntBASIC4.44□□□□□ -1.7
HMGB1P09429 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC4.44□□□□□ -1.7
HMGB1P09429 MIR548AB-201ENST00000584917 84 ntBASIC4.44□□□□□ -1.7
HMGB1P09429 AL031775.1-201ENST00000607014 887 ntBASIC4.44□□□□□ -1.7
HMGB1P09429 AC103710.2-201ENST00000609912 942 ntBASIC4.44□□□□□ -1.7
HMGB1P09429 AC005344.1-201ENST00000613391 459 ntBASIC4.44□□□□□ -1.7
HMGB1P09429 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.44□□□□□ -1.7
HMGB1P09429 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC4.44□□□□□ -1.7
HMGB1P09429 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HMGB1P09429 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HMGB1P09429 CR848007.1-201ENST00000442354 1699 ntBASIC4.44□□□□□ -1.7
HMGB1P09429 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HMGB1P09429 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC4.44□□□□□ -1.7
HMGB1P09429 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
HMGB1P09429 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HMGB1P09429 AL359693.1-201ENST00000614959 2407 ntBASIC4.43□□□□□ -1.7
HMGB1P09429 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HMGB1P09429 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HMGB1P09429 Z83843.1-201ENST00000604070 3685 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 126.6 ms