Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS28Q9UK41 AL049641.1-201ENST00000441055 1948 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS28Q9UK41 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.51□□□□□ -1.85
VPS28Q9UK41 RNU5F-7P-201ENST00000363696 115 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 RNU1-33P-201ENST00000364249 162 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS28Q9UK41 RPL7P25-201ENST00000404151 721 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 RNA5SP293-201ENST00000410527 113 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 BX323014.1-201ENST00000412876 237 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 AP000907.1-201ENST00000428428 510 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC005019.1-201ENST00000436455 431 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC005094.1-201ENST00000440420 368 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC118469.1-201ENST00000442943 488 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 AL357552.1-201ENST00000445254 415 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC140076.1-201ENST00000449897 361 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.51□□□□□ -1.85
VPS28Q9UK41 RPS4XP2-201ENST00000458402 793 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 RPS20P22-201ENST00000473700 357 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 RPS4XP22-201ENST00000480755 780 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
VPS28Q9UK41 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC111000.2-201ENST00000507775 550 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC074250.1-201ENST00000511117 192 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 RNU6-1282P-201ENST00000516735 96 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 RNU6-201P-201ENST00000517100 61 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 RNA5SP291-201ENST00000517222 105 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 IGKV2-26-201ENST00000518305 343 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC100870.1-201ENST00000522035 505 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 AP002748.2-201ENST00000528671 348 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 AP000867.2-201ENST00000532468 320 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS28Q9UK41 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC123904.3-201ENST00000547218 814 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.51□□□□□ -1.85
VPS28Q9UK41 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.51□□□□□ -1.85
VPS28Q9UK41 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC002545.1-201ENST00000592511 181 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC022149.2-201ENST00000621061 203 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC092628.2-201ENST00000622492 339 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.51□□□□□ -1.85
VPS28Q9UK41 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
VPS28Q9UK41 PABPC1P9-201ENST00000426076 1612 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 AL049781.1-201ENST00000623195 3585 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC233263.6-201ENST00000631132 1963 ntBASIC3.51□□□□□ -1.85
VPS28Q9UK41 AC032011.1-201ENST00000611703 1549 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 MAPK10-322ENST00000641485 4530 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
VPS28Q9UK41 Y_RNA.169-201ENST00000363745 96 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 RNU6-805P-201ENST00000365643 106 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.5□□□□□ -1.85
VPS28Q9UK41 RNA5SP252-201ENST00000391131 119 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 AL031577.2-201ENST00000404133 280 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 RNA5SP107-201ENST00000411358 122 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 MRPL50P2-201ENST00000416821 482 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 AL353777.1-201ENST00000425552 326 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS28Q9UK41 RPL21P40-201ENST00000428586 483 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 AC006946.1-201ENST00000429106 328 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 MED14P1-201ENST00000430517 648 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
VPS28Q9UK41 RPL22P17-201ENST00000438729 315 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.5□□□□□ -1.85
VPS28Q9UK41 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS28Q9UK41 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS28Q9UK41 AC008155.2-201ENST00000464337 397 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 RN7SL442P-201ENST00000473804 320 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 AC010631.1-201ENST00000474150 156 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 AC112204.1-201ENST00000502591 103 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS28Q9UK41 AC010486.2-201ENST00000505572 483 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS28Q9UK41 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
VPS28Q9UK41 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.5□□□□□ -1.85
VPS28Q9UK41 SNORA70.19-201ENST00000516717 90 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 AC093012.1-202ENST00000549403 582 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 HIGD1AP1-201ENST00000550979 275 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 TRAV28-201ENST00000557548 323 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 AC090888.1-201ENST00000561335 1141 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.5□□□□□ -1.85
VPS28Q9UK41 HMGB1P6-201ENST00000569046 646 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 SNHG22-203ENST00000617833 660 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 AC009159.1-201ENST00000618386 642 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 AC110801.1-201ENST00000623590 212 ntBASIC3.5□□□□□ -1.85
VPS28Q9UK41 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.5□□□□□ -1.85
VPS28Q9UK41 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
VPS28Q9UK41 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
VPS28Q9UK41 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
VPS28Q9UK41 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
VPS28Q9UK41 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 130 ms