Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MTCYBP1-201ENST00000454315 1119 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 snoU109.4-201ENST00000458953 143 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 snoU109.1-201ENST00000459339 135 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 snoU13.3-201ENST00000459441 104 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 HMGB1P25-201ENST00000468402 607 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 RN7SL504P-201ENST00000494496 287 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AC096751.1-202ENST00000502691 1067 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 MTND2P33-201ENST00000506452 1031 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 RN7SKP43-201ENST00000516173 320 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AC107954.1-201ENST00000565906 727 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AC009977.1-201ENST00000586015 570 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 DEFB131E-202ENST00000602581 683 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AC073648.5-201ENST00000603502 305 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AC087241.4-201ENST00000612441 480 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AC012314.7-201ENST00000619693 93 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AC006065.5-201ENST00000623427 349 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.89
SIX2Q9NPC8 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 SNORA63.1-201ENST00000362493 131 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 Y_RNA.46-201ENST00000362695 102 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 RNU6-97P-201ENST00000363387 104 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 Y_RNA.548-201ENST00000384656 105 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 RPL7P25-201ENST00000404151 721 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 RPS3AP3-201ENST00000411933 242 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AC010975.2-201ENST00000427781 588 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AC244505.5-201ENST00000443639 207 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 RPS20P32-201ENST00000456044 356 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 RPL21P41-201ENST00000459863 264 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 KLF3P2-201ENST00000465138 268 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 RN7SL601P-201ENST00000471221 293 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 PTGES3P3-201ENST00000511479 482 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 RNU4-60P-201ENST00000517239 135 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AP003467.2-201ENST00000520175 319 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AP003392.2-201ENST00000527269 208 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AP003497.1-201ENST00000528472 562 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 OR4P1P-201ENST00000530808 1136 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 EIF1P4-201ENST00000572664 335 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 MIR5004-201ENST00000579078 107 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AC008250.2-201ENST00000615261 205 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AP001506.1-201ENST00000615444 211 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 AC026585.1-201ENST00000619582 524 ntBASIC3.27□□□□□ -1.89
SIX2Q9NPC8 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SIX2Q9NPC8 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.26□□□□□ -1.89
SIX2Q9NPC8 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.26□□□□□ -1.89
SIX2Q9NPC8 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
SIX2Q9NPC8 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
SIX2Q9NPC8 Y_RNA.3-201ENST00000362331 103 ntBASIC3.26□□□□□ -1.89
SIX2Q9NPC8 RNA5SP171-201ENST00000391071 115 ntBASIC3.26□□□□□ -1.89
SIX2Q9NPC8 Y_RNA.619-201ENST00000410951 90 ntBASIC3.26□□□□□ -1.89
SIX2Q9NPC8 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC3.26□□□□□ -1.89
SIX2Q9NPC8 AL359704.1-201ENST00000411586 781 ntBASIC3.26□□□□□ -1.89
SIX2Q9NPC8 AL353678.1-201ENST00000422735 741 ntBASIC3.26□□□□□ -1.89
SIX2Q9NPC8 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.26□□□□□ -1.89
SIX2Q9NPC8 RPL22P17-201ENST00000438729 315 ntBASIC3.26□□□□□ -1.89
SIX2Q9NPC8 MTND6P13-201ENST00000443510 523 ntBASIC3.26□□□□□ -1.89
SIX2Q9NPC8 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC3.26□□□□□ -1.89
SIX2Q9NPC8 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.26□□□□□ -1.89
SIX2Q9NPC8 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
SIX2Q9NPC8 AC104308.1-201ENST00000454621 333 ntBASIC3.26□□□□□ -1.89
SIX2Q9NPC8 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.26□□□□□ -1.89
SIX2Q9NPC8 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.26□□□□□ -1.89
SIX2Q9NPC8 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.26□□□□□ -1.89
SIX2Q9NPC8 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.26□□□□□ -1.89
SIX2Q9NPC8 AP1S2P1-201ENST00000457344 379 ntBASIC3.26□□□□□ -1.89
SIX2Q9NPC8 AC021382.1-201ENST00000483523 359 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms