Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 RPS23P7-201ENST00000466210 444 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AL135752.1-201ENST00000479477 471 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AC012181.1-201ENST00000479895 423 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 RPL30P5-201ENST00000494923 336 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 PCBP2P3-201ENST00000509726 843 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AC022616.3-201ENST00000523940 148 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AC024909.2-201ENST00000553035 286 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 MIR6820-201ENST00000611508 62 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AC068831.7-201ENST00000616954 363 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AC138932.5-201ENST00000617759 563 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AC027309.3-201ENST00000623419 351 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 AC092656.1-203ENST00000624134 423 ntBASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
CHMP1AQ9HD42 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 RLIMP1-201ENST00000339626 1680 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 RNU6-283P-201ENST00000364788 107 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 Y_RNA.436-201ENST00000384097 102 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 RNU6-1119P-201ENST00000384349 108 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 MIR325-201ENST00000385260 98 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 RPS4XP3-201ENST00000398541 413 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 NDUFS5P1-201ENST00000405668 289 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 RNU2-8P-201ENST00000410727 190 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 AC127391.1-201ENST00000411737 98 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 C1DP2-201ENST00000418167 426 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 USP9YP36-201ENST00000424581 829 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 RPL18P10-201ENST00000425606 538 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 SNRPGP6-201ENST00000451124 220 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 AC006539.3-201ENST00000454258 129 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 RNA5SP164-201ENST00000516533 110 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 RN7SKP258-201ENST00000517151 304 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 RAB9BP1-201ENST00000519581 626 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 AP006587.4-201ENST00000526053 529 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 AC012213.3-201ENST00000577199 777 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 BNIP3P33-201ENST00000598912 569 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 AC008745.1-201ENST00000604064 271 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 AC064807.4-201ENST00000607201 407 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 AL133173.2-201ENST00000614270 90 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 MIR6500-201ENST00000622700 86 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 AC112484.5-201ENST00000624189 228 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 AL136164.4-201ENST00000625013 2135 ntBASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.18□□□□□ -1.9
CHMP1AQ9HD42 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 SNORD56.2-201ENST00000363242 71 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 RNU5E-6P-201ENST00000365574 115 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 RNU6-701P-201ENST00000384059 107 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 RNU6-39P-201ENST00000384344 107 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 AL022722.2-201ENST00000402519 180 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 FAT1P1-201ENST00000406588 507 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 AC016397.1-201ENST00000412463 242 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 BX295541.1-201ENST00000417774 250 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 HMGB3P20-201ENST00000417997 600 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 TMEM167AP1-201ENST00000423409 219 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 GAS5-208ENST00000425771 242 ntTSL 3 BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 AC093106.2-201ENST00000428212 385 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 SNRPEP4-201ENST00000435815 279 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 RPS27P29-201ENST00000463110 252 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 KLF3P2-201ENST00000465138 268 ntBASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.17□□□□□ -1.9
CHMP1AQ9HD42 RPS20P22-201ENST00000473700 357 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms