Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC019129.1-201ENST00000403786 261 ntBASIC2.57□□□□□ -2
USP42Q9H9J4 RNA5SP492-201ENST00000411330 114 ntBASIC2.57□□□□□ -2
USP42Q9H9J4 USP9YP27-201ENST00000418455 438 ntBASIC2.57□□□□□ -2
USP42Q9H9J4 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC2.57□□□□□ -2
USP42Q9H9J4 HMGN2P30-201ENST00000423237 256 ntBASIC2.57□□□□□ -2
USP42Q9H9J4 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC2.57□□□□□ -2
USP42Q9H9J4 AC108729.2-201ENST00000476543 840 ntBASIC2.57□□□□□ -2
USP42Q9H9J4 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC2.57□□□□□ -2
USP42Q9H9J4 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC2.57□□□□□ -2
USP42Q9H9J4 NBEAP1-201ENST00000554452 979 ntBASIC2.57□□□□□ -2
USP42Q9H9J4 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
USP42Q9H9J4 AC023043.2-201ENST00000589678 1026 ntBASIC2.57□□□□□ -2
USP42Q9H9J4 AC020895.1-201ENST00000595362 272 ntBASIC2.57□□□□□ -2
USP42Q9H9J4 AC008739.2-201ENST00000597006 317 ntBASIC2.57□□□□□ -2
USP42Q9H9J4 U73023.1-201ENST00000603134 700 ntBASIC2.57□□□□□ -2
USP42Q9H9J4 AC120053.1-201ENST00000607706 736 ntBASIC2.57□□□□□ -2
USP42Q9H9J4 AC009318.4-201ENST00000620496 486 ntBASIC2.57□□□□□ -2
USP42Q9H9J4 AC106730.3-201ENST00000624568 641 ntBASIC2.57□□□□□ -2
USP42Q9H9J4 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.57□□□□□ -2
USP42Q9H9J4 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC2.57□□□□□ -2
USP42Q9H9J4 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.57□□□□□ -2
USP42Q9H9J4 MIRLET7G-201ENST00000362280 84 ntBASIC2.56□□□□□ -2
USP42Q9H9J4 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.56□□□□□ -2
USP42Q9H9J4 OR4K11P-201ENST00000431829 904 ntBASIC2.56□□□□□ -2
USP42Q9H9J4 MTND5P8-201ENST00000449817 1083 ntBASIC2.56□□□□□ -2
USP42Q9H9J4 SEM1P1-201ENST00000506694 209 ntBASIC2.56□□□□□ -2
USP42Q9H9J4 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.56□□□□□ -2
USP42Q9H9J4 RNU6-1053P-201ENST00000515930 101 ntBASIC2.56□□□□□ -2
USP42Q9H9J4 RNU6-27P-201ENST00000516146 107 ntBASIC2.56□□□□□ -2
USP42Q9H9J4 HMGB1P1-201ENST00000522557 636 ntBASIC2.56□□□□□ -2
USP42Q9H9J4 ZNF705CP-201ENST00000530515 889 ntBASIC2.56□□□□□ -2
USP42Q9H9J4 PRELID2P1-201ENST00000552837 301 ntBASIC2.56□□□□□ -2
USP42Q9H9J4 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC2.56□□□□□ -2
USP42Q9H9J4 AMZ2P1-203ENST00000565833 850 ntBASIC2.56□□□□□ -2
USP42Q9H9J4 BPTFP1-201ENST00000579209 492 ntBASIC2.56□□□□□ -2
USP42Q9H9J4 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.56□□□□□ -2
USP42Q9H9J4 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC2.56□□□□□ -2
USP42Q9H9J4 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.56□□□□□ -2
USP42Q9H9J4 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC2.56□□□□□ -2
USP42Q9H9J4 AL121594.5-201ENST00000631724 573 ntBASIC2.56□□□□□ -2
USP42Q9H9J4 AC132825.7-201ENST00000638744 335 ntBASIC2.56□□□□□ -2
USP42Q9H9J4 Z82195.2-201ENST00000612348 18351 ntBASIC2.56□□□□□ -2
USP42Q9H9J4 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.56□□□□□ -2
USP42Q9H9J4 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
USP42Q9H9J4 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
USP42Q9H9J4 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.55□□□□□ -2
USP42Q9H9J4 CKAP2P1-201ENST00000555477 2049 ntBASIC2.55□□□□□ -2
USP42Q9H9J4 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.55□□□□□ -2
USP42Q9H9J4 AL096701.2-201ENST00000416920 238 ntBASIC2.55□□□□□ -2
USP42Q9H9J4 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.55□□□□□ -2
USP42Q9H9J4 AL691517.1-201ENST00000440833 1235 ntBASIC2.55□□□□□ -2
USP42Q9H9J4 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.55□□□□□ -2
USP42Q9H9J4 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC2.55□□□□□ -2
USP42Q9H9J4 AC109471.1-201ENST00000511631 612 ntBASIC2.55□□□□□ -2
USP42Q9H9J4 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC2.55□□□□□ -2
USP42Q9H9J4 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC2.55□□□□□ -2
USP42Q9H9J4 GNAI2P1-201ENST00000541815 315 ntBASIC2.55□□□□□ -2
USP42Q9H9J4 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC2.55□□□□□ -2
USP42Q9H9J4 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC2.55□□□□□ -2
USP42Q9H9J4 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC2.55□□□□□ -2
USP42Q9H9J4 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.55□□□□□ -2
USP42Q9H9J4 BNIP3P8-201ENST00000597863 560 ntBASIC2.55□□□□□ -2
USP42Q9H9J4 RPL23AP78-201ENST00000599928 470 ntBASIC2.55□□□□□ -2
USP42Q9H9J4 AL450270.1-201ENST00000606160 391 ntBASIC2.55□□□□□ -2
USP42Q9H9J4 AP002826.1-201ENST00000608835 315 ntBASIC2.55□□□□□ -2
USP42Q9H9J4 AL161629.2-201ENST00000615347 275 ntBASIC2.55□□□□□ -2
USP42Q9H9J4 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC2.55□□□□□ -2
USP42Q9H9J4 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.55□□□□□ -2
USP42Q9H9J4 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.55□□□□□ -2
USP42Q9H9J4 AL513185.3-201ENST00000433335 1300 ntBASIC2.55□□□□□ -2
USP42Q9H9J4 AC010733.2-201ENST00000589496 5702 ntBASIC2.55□□□□□ -2
USP42Q9H9J4 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC2.54□□□□□ -2
USP42Q9H9J4 RNU1-109P-201ENST00000383960 147 ntBASIC2.54□□□□□ -2
USP42Q9H9J4 SNORA40.18-201ENST00000391200 128 ntBASIC2.54□□□□□ -2
USP42Q9H9J4 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.54□□□□□ -2
USP42Q9H9J4 TRIM60P5Y-201ENST00000413946 574 ntBASIC2.54□□□□□ -2
USP42Q9H9J4 CR848007.2-201ENST00000424918 787 ntBASIC2.54□□□□□ -2
USP42Q9H9J4 EZH2P1-201ENST00000431167 291 ntBASIC2.54□□□□□ -2
USP42Q9H9J4 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC2.54□□□□□ -2
USP42Q9H9J4 AC092573.2-201ENST00000434546 243 ntBASIC2.54□□□□□ -2
USP42Q9H9J4 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC2.54□□□□□ -2
USP42Q9H9J4 LSM1P1-201ENST00000438629 273 ntBASIC2.54□□□□□ -2
USP42Q9H9J4 RPL23AP16-201ENST00000441715 421 ntBASIC2.54□□□□□ -2
USP42Q9H9J4 AC009296.1-201ENST00000443146 155 ntBASIC2.54□□□□□ -2
USP42Q9H9J4 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC2.54□□□□□ -2
USP42Q9H9J4 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC2.54□□□□□ -2
USP42Q9H9J4 AC010099.1-201ENST00000455434 375 ntBASIC2.54□□□□□ -2
USP42Q9H9J4 PNPLA4P1-201ENST00000458328 305 ntBASIC2.54□□□□□ -2
USP42Q9H9J4 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC2.54□□□□□ -2
USP42Q9H9J4 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.54□□□□□ -2
USP42Q9H9J4 EEF1B2P4-201ENST00000551398 348 ntBASIC2.54□□□□□ -2
USP42Q9H9J4 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC2.54□□□□□ -2
USP42Q9H9J4 NIFKP8-201ENST00000560500 874 ntBASIC2.54□□□□□ -2
USP42Q9H9J4 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC2.54□□□□□ -2
USP42Q9H9J4 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC2.54□□□□□ -2
USP42Q9H9J4 ZNF663P-202ENST00000641770 1131 ntBASIC2.54□□□□□ -2
USP42Q9H9J4 NUP58P1-201ENST00000502546 1738 ntBASIC2.54□□□□□ -2
USP42Q9H9J4 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
USP42Q9H9J4 AP005901.5-201ENST00000545779 1796 ntBASIC2.54□□□□□ -2
USP42Q9H9J4 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms