Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC092447.10-201ENST00000620607 1652 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 GNG5P1-201ENST00000255500 204 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 RNU6-777P-201ENST00000364265 104 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 RNU6-1027P-201ENST00000383998 107 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 RNU6-637P-201ENST00000384050 107 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
VPS35Q96QK1 Z92545.1-201ENST00000411782 234 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 TPMTP3-201ENST00000411928 735 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 ELOCP9-201ENST00000418624 239 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 AC018630.2-202ENST00000422992 927 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 COX7BP2-201ENST00000437976 242 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 RPL37P4-201ENST00000448908 268 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 RPL7P18-201ENST00000478965 734 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 TTC39CP1-201ENST00000512513 755 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 SCARNA15.2-201ENST00000516409 127 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 RNU6-1256P-201ENST00000516539 103 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 SCARNA13-201ENST00000516672 275 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 OR7K1P-201ENST00000546439 926 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 NBEAP1-201ENST00000554452 979 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 ANKRD36BP2-206ENST00000575193 1245 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 AL451007.1-201ENST00000595491 289 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 RPL23AP88-201ENST00000605759 454 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 AC010338.1-201ENST00000621823 717 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 OR5H6-203ENST00000642105 978 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 AC006378.2-201ENST00000623178 2476 ntBASIC2.86□□□□□ -1.95
VPS35Q96QK1 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.86□□□□□ -1.95
VPS35Q96QK1 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
VPS35Q96QK1 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.85□□□□□ -1.95
VPS35Q96QK1 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
VPS35Q96QK1 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
VPS35Q96QK1 RNU6-114P-201ENST00000384704 105 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 RPL19P1-201ENST00000411635 428 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC2.85□□□□□ -1.95
VPS35Q96QK1 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC2.85□□□□□ -1.95
VPS35Q96QK1 RPL7L1P10-201ENST00000427790 463 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC2.85□□□□□ -1.95
VPS35Q96QK1 AC107083.1-201ENST00000439643 279 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 PAXBP1P1-201ENST00000449315 447 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 NIPA2P5-201ENST00000452282 464 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 GSTA11P-201ENST00000452866 669 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC2.85□□□□□ -1.95
VPS35Q96QK1 MTND2P24-201ENST00000453434 806 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 DUXAP8-207ENST00000456786 622 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 USP9YP25-201ENST00000457708 443 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 RPS3AP14-201ENST00000483907 780 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 AHI1-208ENST00000488690 712 ntTSL 5 BASIC2.85□□□□□ -1.95
VPS35Q96QK1 AC117522.3-201ENST00000507974 584 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC2.85□□□□□ -1.95
VPS35Q96QK1 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC2.85□□□□□ -1.95
VPS35Q96QK1 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.85□□□□□ -1.95
VPS35Q96QK1 AC124947.2-202ENST00000552735 133 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC2.85□□□□□ -1.95
VPS35Q96QK1 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
VPS35Q96QK1 ACTR3BP3-201ENST00000565577 979 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 MTCO2P2-201ENST00000591258 225 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2.85□□□□□ -1.95
VPS35Q96QK1 AC079089.3-201ENST00000603094 673 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 AC024153.1-201ENST00000603103 365 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 Z99129.2-201ENST00000619967 314 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
VPS35Q96QK1 AC103798.2-201ENST00000624292 632 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 MIR4275-201ENST00000636486 87 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
VPS35Q96QK1 AC091564.4-201ENST00000533934 2194 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 AC009487.2-201ENST00000420969 6821 ntBASIC2.85□□□□□ -1.95
VPS35Q96QK1 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
VPS35Q96QK1 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
VPS35Q96QK1 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
VPS35Q96QK1 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.84□□□□□ -1.95
VPS35Q96QK1 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
VPS35Q96QK1 RNU1-35P-201ENST00000362782 153 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 MIR325-201ENST00000385260 98 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.84□□□□□ -1.95
VPS35Q96QK1 AC008850.1-201ENST00000427546 362 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 AC084290.1-201ENST00000434995 374 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 LSM1P1-201ENST00000438629 273 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 MTND3P1-201ENST00000441336 220 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 AC112653.1-201ENST00000443851 386 ntBASIC2.84□□□□□ -1.95
VPS35Q96QK1 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms