Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.72□□□□□ -1.49
TRERF1Q96PN7 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC5.72□□□□□ -1.49
TRERF1Q96PN7 RNU6-278P-201ENST00000390945 109 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 RNU6-1140P-201ENST00000410517 106 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AL590139.1-201ENST00000416267 400 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 RPL12P34-201ENST00000424532 479 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 EIF1P2-201ENST00000428233 350 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 PSMA2P3-201ENST00000429685 675 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AC097713.2-201ENST00000430199 356 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AC093414.1-201ENST00000434712 514 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 RPL36AP6-201ENST00000435770 321 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC5.72□□□□□ -1.49
TRERF1Q96PN7 FHP1-201ENST00000442741 703 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
TRERF1Q96PN7 OR2AQ1P-201ENST00000451972 200 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AP000942.1-201ENST00000463969 747 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 RN7SL738P-201ENST00000470264 297 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AC008897.1-201ENST00000494006 347 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AC026801.1-201ENST00000497178 464 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AC093852.1-201ENST00000503587 266 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AC098976.1-201ENST00000513014 541 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AC093853.1-201ENST00000515689 483 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AC100784.1-201ENST00000522790 310 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AL121576.1-201ENST00000556055 276 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 RN7SL52P-201ENST00000584271 284 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AP001282.2-201ENST00000616149 309 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 RN7SL722P-201ENST00000617780 284 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 RN7SL565P-201ENST00000618246 284 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.72□□□□□ -1.49
TRERF1Q96PN7 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
TRERF1Q96PN7 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
TRERF1Q96PN7 NXPH1-205ENST00000602349 1953 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.72□□□□□ -1.49
TRERF1Q96PN7 STX3-208ENST00000641815 3236 ntBASIC5.72□□□□□ -1.49
TRERF1Q96PN7 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
TRERF1Q96PN7 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
TRERF1Q96PN7 AL672167.1-205ENST00000641112 3080 ntBASIC5.71□□□□□ -1.49
TRERF1Q96PN7 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
TRERF1Q96PN7 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.71□□□□□ -1.49
TRERF1Q96PN7 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.71□□□□□ -1.5
TRERF1Q96PN7 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
TRERF1Q96PN7 RNY1-201ENST00000364228 113 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 SNORD50B-201ENST00000364995 70 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
TRERF1Q96PN7 RNA5SP113-201ENST00000410486 84 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 RNU6-121P-201ENST00000410525 99 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.71□□□□□ -1.5
TRERF1Q96PN7 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC5.71□□□□□ -1.5
TRERF1Q96PN7 MTCO3P29-201ENST00000432119 779 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 RPL21P112-201ENST00000434403 463 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 AC016696.1-201ENST00000446949 318 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 PLGLA-201ENST00000465668 449 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 AC096745.1-201ENST00000509945 370 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 RNA5SP464-201ENST00000516251 108 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 snoU109.6-201ENST00000516831 118 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC5.71□□□□□ -1.5
TRERF1Q96PN7 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.71□□□□□ -1.5
TRERF1Q96PN7 AC026371.1-201ENST00000551867 419 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC5.71□□□□□ -1.5
TRERF1Q96PN7 AC022884.2-201ENST00000578535 580 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 AC091042.1-201ENST00000579213 173 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.71□□□□□ -1.5
TRERF1Q96PN7 AC008521.1-201ENST00000587471 187 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.71□□□□□ -1.5
TRERF1Q96PN7 AC012443.1-201ENST00000605605 231 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.5
TRERF1Q96PN7 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
TRERF1Q96PN7 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
TRERF1Q96PN7 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.71□□□□□ -1.5
TRERF1Q96PN7 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
TRERF1Q96PN7 Z95327.2-201ENST00000414579 1873 ntBASIC5.71□□□□□ -1.5
TRERF1Q96PN7 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
TRERF1Q96PN7 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
TRERF1Q96PN7 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
TRERF1Q96PN7 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
TRERF1Q96PN7 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TRERF1Q96PN7 Y_RNA.65-201ENST00000362846 100 ntBASIC5.7□□□□□ -1.5
TRERF1Q96PN7 MIR192-201ENST00000384915 110 ntBASIC5.7□□□□□ -1.5
TRERF1Q96PN7 RPL21P67-201ENST00000402896 478 ntBASIC5.7□□□□□ -1.5
TRERF1Q96PN7 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.7□□□□□ -1.5
TRERF1Q96PN7 FAR2P4-202ENST00000425399 584 ntBASIC5.7□□□□□ -1.5
TRERF1Q96PN7 AC004383.1-201ENST00000438135 289 ntBASIC5.7□□□□□ -1.5
TRERF1Q96PN7 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.7□□□□□ -1.5
TRERF1Q96PN7 AC006967.1-201ENST00000467608 589 ntBASIC5.7□□□□□ -1.5
TRERF1Q96PN7 AC006463.2-201ENST00000473326 348 ntBASIC5.7□□□□□ -1.5
TRERF1Q96PN7 RN7SL441P-201ENST00000492388 296 ntBASIC5.7□□□□□ -1.5
TRERF1Q96PN7 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC5.7□□□□□ -1.5
TRERF1Q96PN7 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC5.7□□□□□ -1.5
TRERF1Q96PN7 RNU6-798P-201ENST00000516912 103 ntBASIC5.7□□□□□ -1.5
TRERF1Q96PN7 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC5.7□□□□□ -1.5
TRERF1Q96PN7 APAF1-207ENST00000547743 651 ntTSL 3 BASIC5.7□□□□□ -1.5
TRERF1Q96PN7 SARNP-203ENST00000552080 726 ntTSL 2 BASIC5.7□□□□□ -1.5
TRERF1Q96PN7 NDUFB4P11-201ENST00000560510 395 ntBASIC5.7□□□□□ -1.5
TRERF1Q96PN7 AC006600.1-201ENST00000572529 153 ntBASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms