Protein–RNA interactions for Protein: Q96JB5

CDK5RAP3, CDK5 regulatory subunit-associated protein 3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3Q96JB5 MAPK10-253ENST00000641010 4072 ntBASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
CDK5RAP3Q96JB5 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 RNU6-780P-201ENST00000391030 104 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 AL109755.1-201ENST00000401791 649 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 SNORA3.3-201ENST00000408712 125 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 RNA5SP129-201ENST00000410276 118 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 RNA5SP107-201ENST00000411358 122 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 MTCO2P19-201ENST00000427513 598 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 AC004866.2-201ENST00000438285 481 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 AC003071.1-201ENST00000451219 789 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 HMGN2P16-201ENST00000456802 261 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 AC007537.2-201ENST00000472093 511 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 AC023598.1-201ENST00000472521 361 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 AC084198.1-201ENST00000477747 402 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 RN7SL132P-201ENST00000478131 296 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 TRBV12-2-201ENST00000489763 344 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 AC079382.1-201ENST00000493346 557 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 AC019235.1-201ENST00000503847 207 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 AC012507.3-201ENST00000603556 477 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 Z84480.1-201ENST00000605131 311 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 AC103710.2-201ENST00000609912 942 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 MIR486-1-201ENST00000612171 68 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 AL603758.1-201ENST00000618654 241 ntBASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.28□□□□□ -1.72
CDK5RAP3Q96JB5 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 DDX10P1-201ENST00000448545 1933 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 Y_RNA.9-201ENST00000362354 101 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 RNU6-223P-201ENST00000362830 107 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 SNORD56.2-201ENST00000363242 71 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 U3.11-201ENST00000364476 212 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 Y_RNA.248-201ENST00000364501 109 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 RNU6-882P-201ENST00000391025 103 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 RPS3AP24-201ENST00000407896 734 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 RPL23AP30-201ENST00000432419 501 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 GPR143P-201ENST00000434155 205 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AL596276.1-201ENST00000434465 418 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 MTATP6P30-201ENST00000443540 664 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AL359073.1-201ENST00000448036 403 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 MLLT10P2-201ENST00000506434 249 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AC105914.1-201ENST00000511798 226 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 SCARNA24.1-201ENST00000516465 137 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AC090572.1-201ENST00000519251 160 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 IGKV2D-19-201ENST00000523346 262 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 SYF2P1-201ENST00000550658 413 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 BNIP3P5-201ENST00000562290 498 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AL022099.1-201ENST00000604551 712 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 BRDTP1-201ENST00000605735 677 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AC005344.1-201ENST00000613391 459 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AC015967.1-201ENST00000619893 476 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AL360181.4-201ENST00000621752 134 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AL353748.2-201ENST00000622148 471 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AL354798.1-201ENST00000622505 329 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 FP236240.3-201ENST00000623061 327 ntBASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.27□□□□□ -1.73
CDK5RAP3Q96JB5 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
CDK5RAP3Q96JB5 AC116096.1-201ENST00000566804 2314 ntBASIC4.26□□□□□ -1.73
CDK5RAP3Q96JB5 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CDK5RAP3Q96JB5 RNU6-50P-201ENST00000362356 103 ntBASIC4.26□□□□□ -1.73
CDK5RAP3Q96JB5 Y_RNA.159-201ENST00000363674 87 ntBASIC4.26□□□□□ -1.73
CDK5RAP3Q96JB5 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CDK5RAP3Q96JB5 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.26□□□□□ -1.73
CDK5RAP3Q96JB5 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.26□□□□□ -1.73
CDK5RAP3Q96JB5 AC005094.1-201ENST00000440420 368 ntBASIC4.26□□□□□ -1.73
CDK5RAP3Q96JB5 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC4.26□□□□□ -1.73
CDK5RAP3Q96JB5 AC006480.1-201ENST00000449887 378 ntBASIC4.26□□□□□ -1.73
CDK5RAP3Q96JB5 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms