Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.27□□□□□ -2.21
CHD9Q3L8U1 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.27□□□□□ -2.21
CHD9Q3L8U1 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AP002907.1-201ENST00000606361 1430 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 RNA5SP105-201ENST00000391123 113 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AC073264.1-201ENST00000411508 416 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AC009302.1-201ENST00000417147 390 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.27□□□□□ -2.21
CHD9Q3L8U1 SNORD121B-201ENST00000458838 81 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AC006483.1-201ENST00000487308 313 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 MTCYBP35-201ENST00000503630 1137 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 RNA5SP309-201ENST00000516670 106 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.27□□□□□ -2.21
CHD9Q3L8U1 SULT1C2P1-202ENST00000562418 459 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AC096586.2-201ENST00000610260 441 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AC012640.5-201ENST00000623897 319 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 AC048347.1-201ENST00000624621 427 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 FO624990.1-201ENST00000636373 85 ntBASIC1.27□□□□□ -2.21
CHD9Q3L8U1 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
CHD9Q3L8U1 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.27□□□□□ -2.21
CHD9Q3L8U1 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
CHD9Q3L8U1 RNU1-148P-201ENST00000384472 162 ntBASIC1.26□□□□□ -2.21
CHD9Q3L8U1 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC1.26□□□□□ -2.21
CHD9Q3L8U1 CYCSP48-201ENST00000417124 323 ntBASIC1.26□□□□□ -2.21
CHD9Q3L8U1 RPL7P53-201ENST00000421245 739 ntBASIC1.26□□□□□ -2.21
CHD9Q3L8U1 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC1.26□□□□□ -2.21
CHD9Q3L8U1 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC1.26□□□□□ -2.21
CHD9Q3L8U1 MIR3973-201ENST00000579824 107 ntBASIC1.26□□□□□ -2.21
CHD9Q3L8U1 uc_338.20-201ENST00000621563 178 ntBASIC1.26□□□□□ -2.21
CHD9Q3L8U1 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
CHD9Q3L8U1 AC110792.3-201ENST00000595906 1614 ntBASIC1.26□□□□□ -2.21
CHD9Q3L8U1 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC1.26□□□□□ -2.21
CHD9Q3L8U1 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
CHD9Q3L8U1 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.26□□□□□ -2.21
CHD9Q3L8U1 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.26□□□□□ -2.21
CHD9Q3L8U1 SMILR-201ENST00000533992 553 ntTSL 4 BASIC1.26□□□□□ -2.21
CHD9Q3L8U1 ZNF192P1-203ENST00000565888 810 ntBASIC1.26□□□□□ -2.21
CHD9Q3L8U1 AC123912.5-201ENST00000605470 343 ntBASIC1.26□□□□□ -2.21
CHD9Q3L8U1 U8.9-201ENST00000365667 134 ntBASIC1.26□□□□□ -2.21
CHD9Q3L8U1 HMGB1P13-201ENST00000406019 642 ntBASIC1.26□□□□□ -2.21
CHD9Q3L8U1 AL445183.3-201ENST00000414168 502 ntBASIC1.26□□□□□ -2.21
CHD9Q3L8U1 TRGV6-201ENST00000417928 299 ntBASIC1.26□□□□□ -2.21
CHD9Q3L8U1 RSL24D1P2-201ENST00000445584 366 ntBASIC1.26□□□□□ -2.21
CHD9Q3L8U1 VN1R96P-201ENST00000446052 858 ntBASIC1.26□□□□□ -2.21
CHD9Q3L8U1 RPL7P31-201ENST00000450192 724 ntBASIC1.26□□□□□ -2.21
CHD9Q3L8U1 AC010627.1-201ENST00000503819 1294 ntBASIC1.26□□□□□ -2.21
CHD9Q3L8U1 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC1.26□□□□□ -2.21
CHD9Q3L8U1 AC073413.2-201ENST00000604332 360 ntBASIC1.26□□□□□ -2.21
CHD9Q3L8U1 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.26□□□□□ -2.21
CHD9Q3L8U1 RFC1-217ENST00000639695 867 ntTSL 5 BASIC1.26□□□□□ -2.21
CHD9Q3L8U1 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.25□□□□□ -2.21
CHD9Q3L8U1 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC1.25□□□□□ -2.21
CHD9Q3L8U1 AC023128.2-201ENST00000420880 1223 ntBASIC1.25□□□□□ -2.21
CHD9Q3L8U1 RPL30P3-201ENST00000424262 333 ntBASIC1.25□□□□□ -2.21
CHD9Q3L8U1 ELOCP10-201ENST00000440624 327 ntBASIC1.25□□□□□ -2.21
CHD9Q3L8U1 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC1.25□□□□□ -2.21
CHD9Q3L8U1 OR4V1P-201ENST00000525394 1140 ntBASIC1.25□□□□□ -2.21
CHD9Q3L8U1 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC1.25□□□□□ -2.21
CHD9Q3L8U1 AC090953.1-201ENST00000604305 1092 ntBASIC1.25□□□□□ -2.21
CHD9Q3L8U1 ELOCP34-201ENST00000604436 327 ntBASIC1.25□□□□□ -2.21
CHD9Q3L8U1 RNA5SP295-201ENST00000362655 121 ntBASIC1.25□□□□□ -2.21
CHD9Q3L8U1 HSPE1P26-201ENST00000405341 275 ntBASIC1.25□□□□□ -2.21
CHD9Q3L8U1 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC1.25□□□□□ -2.21
CHD9Q3L8U1 AC008127.2-201ENST00000549925 1075 ntBASIC1.25□□□□□ -2.21
CHD9Q3L8U1 SUB1P4-201ENST00000566062 339 ntBASIC1.25□□□□□ -2.21
CHD9Q3L8U1 SNRPGP15-201ENST00000600149 222 ntBASIC1.25□□□□□ -2.21
CHD9Q3L8U1 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.24□□□□□ -2.21
CHD9Q3L8U1 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC1.24□□□□□ -2.21
CHD9Q3L8U1 RNU1-133P-201ENST00000364867 167 ntBASIC1.24□□□□□ -2.21
CHD9Q3L8U1 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.24□□□□□ -2.21
CHD9Q3L8U1 RFC5P1-201ENST00000454419 874 ntBASIC1.24□□□□□ -2.21
CHD9Q3L8U1 AC092754.2-201ENST00000463506 460 ntBASIC1.24□□□□□ -2.21
CHD9Q3L8U1 RNU6-347P-201ENST00000516658 105 ntBASIC1.24□□□□□ -2.21
CHD9Q3L8U1 RNU6-943P-201ENST00000516960 98 ntBASIC1.24□□□□□ -2.21
CHD9Q3L8U1 RNA5SP337-201ENST00000517007 109 ntBASIC1.24□□□□□ -2.21
CHD9Q3L8U1 SNORA31.26-201ENST00000517250 137 ntBASIC1.24□□□□□ -2.21
CHD9Q3L8U1 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC1.24□□□□□ -2.21
CHD9Q3L8U1 VN1R107P-201ENST00000601784 209 ntBASIC1.24□□□□□ -2.21
CHD9Q3L8U1 AC090525.3-201ENST00000605601 189 ntBASIC1.24□□□□□ -2.21
CHD9Q3L8U1 AC018630.2-201ENST00000534866 2403 ntBASIC1.24□□□□□ -2.21
CHD9Q3L8U1 RNA5SP257-201ENST00000363023 116 ntBASIC1.24□□□□□ -2.21
CHD9Q3L8U1 MIR92A2-201ENST00000385299 75 ntBASIC1.24□□□□□ -2.21
CHD9Q3L8U1 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC1.24□□□□□ -2.21
CHD9Q3L8U1 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.24□□□□□ -2.21
CHD9Q3L8U1 AC092451.1-201ENST00000480211 153 ntBASIC1.24□□□□□ -2.21
CHD9Q3L8U1 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC1.24□□□□□ -2.21
CHD9Q3L8U1 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.24□□□□□ -2.21
CHD9Q3L8U1 AL355816.1-201ENST00000607951 118 ntBASIC1.24□□□□□ -2.21
CHD9Q3L8U1 MIR4278-201ENST00000636094 69 ntBASIC1.24□□□□□ -2.21
CHD9Q3L8U1 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
CHD9Q3L8U1 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
CHD9Q3L8U1 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
CHD9Q3L8U1 RNA5SP167-201ENST00000365461 116 ntBASIC1.23□□□□□ -2.21
CHD9Q3L8U1 RNU6-882P-201ENST00000391025 103 ntBASIC1.23□□□□□ -2.21
CHD9Q3L8U1 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC1.23□□□□□ -2.21
CHD9Q3L8U1 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC1.23□□□□□ -2.21
CHD9Q3L8U1 TRAPPC2P9-201ENST00000434556 343 ntBASIC1.23□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms