Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AC041039.1-201ENST00000485656 536 ntBASIC4.93□□□□□ -1.62
SF3A1Q15459 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC4.93□□□□□ -1.62
SF3A1Q15459 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SF3A1Q15459 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.93□□□□□ -1.62
SF3A1Q15459 RNA5SP401-201ENST00000515920 127 ntBASIC4.93□□□□□ -1.62
SF3A1Q15459 RN7SKP13-201ENST00000515933 244 ntBASIC4.93□□□□□ -1.62
SF3A1Q15459 RNA5SP291-201ENST00000517222 105 ntBASIC4.93□□□□□ -1.62
SF3A1Q15459 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.93□□□□□ -1.62
SF3A1Q15459 SYF2P1-201ENST00000550658 413 ntBASIC4.93□□□□□ -1.62
SF3A1Q15459 CBX3P5-201ENST00000552017 521 ntBASIC4.93□□□□□ -1.62
SF3A1Q15459 CKAP2P1-201ENST00000555477 2049 ntBASIC4.93□□□□□ -1.62
SF3A1Q15459 AC013553.2-201ENST00000604244 589 ntBASIC4.93□□□□□ -1.62
SF3A1Q15459 AC019193.2-201ENST00000610012 634 ntBASIC4.93□□□□□ -1.62
SF3A1Q15459 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.93□□□□□ -1.62
SF3A1Q15459 MIR6758-201ENST00000620653 63 ntBASIC4.93□□□□□ -1.62
SF3A1Q15459 AC011155.2-201ENST00000623202 216 ntBASIC4.93□□□□□ -1.62
SF3A1Q15459 FER-210ENST00000628534 558 ntTSL 5 BASIC4.93□□□□□ -1.62
SF3A1Q15459 MTND5P42-201ENST00000637720 498 ntBASIC4.93□□□□□ -1.62
SF3A1Q15459 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SF3A1Q15459 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SF3A1Q15459 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.93□□□□□ -1.62
SF3A1Q15459 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SF3A1Q15459 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SF3A1Q15459 RPL32P3-201ENST00000359025 275 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 Y_RNA.38-201ENST00000362617 102 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 RNU6-534P-201ENST00000364877 106 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 SNORD115-7-201ENST00000365306 82 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC4.92□□□□□ -1.62
SF3A1Q15459 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SF3A1Q15459 RNU6-14P-201ENST00000384630 106 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 UBE2V1P2-201ENST00000397758 440 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 RNA5SP111-201ENST00000411386 101 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.92□□□□□ -1.62
SF3A1Q15459 AC068533.1-201ENST00000418542 415 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 AL356387.2-201ENST00000422272 243 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 BTF3P10-201ENST00000433415 495 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 AC009237.8-201ENST00000445492 379 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC4.92□□□□□ -1.62
SF3A1Q15459 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.92□□□□□ -1.62
SF3A1Q15459 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC4.92□□□□□ -1.62
SF3A1Q15459 snoU13.1-201ENST00000459157 104 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 GMFBP1-201ENST00000467831 427 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 RPS20P22-201ENST00000473700 357 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 AC111000.3-201ENST00000508057 576 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 RBBP4P6-201ENST00000508098 202 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 PARP4P3-201ENST00000510265 317 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC4.92□□□□□ -1.62
SF3A1Q15459 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.92□□□□□ -1.62
SF3A1Q15459 SNORA31.3-201ENST00000516029 96 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 IGLVIV-65-201ENST00000517313 360 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 AC068831.4-201ENST00000556118 109 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 MIR4703-201ENST00000577728 79 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.92□□□□□ -1.62
SF3A1Q15459 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.92□□□□□ -1.62
SF3A1Q15459 AC053481.4-201ENST00000583164 216 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 AC093227.2-201ENST00000589357 285 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 AL670379.4-201ENST00000605279 254 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 MIR432-201ENST00000606207 94 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SF3A1Q15459 AC034102.8-201ENST00000615146 484 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 AL359547.2-201ENST00000615810 418 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SF3A1Q15459 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.92□□□□□ -1.62
SF3A1Q15459 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
SF3A1Q15459 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.92□□□□□ -1.62
SF3A1Q15459 AF117829.1-206ENST00000621883 3802 ntBASIC4.92□□□□□ -1.62
SF3A1Q15459 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.91□□□□□ -1.62
SF3A1Q15459 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.91□□□□□ -1.62
SF3A1Q15459 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.91□□□□□ -1.62
SF3A1Q15459 UBE2L2-201ENST00000254302 429 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 NACAP2-201ENST00000318548 624 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
SF3A1Q15459 RNA5SP388-201ENST00000362584 119 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.91□□□□□ -1.62
SF3A1Q15459 RNU6-741P-201ENST00000383889 107 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 MIR513A2-201ENST00000385249 127 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 RNA5SP332-201ENST00000391063 115 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 SNORA11F-201ENST00000408237 128 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 U3.42-201ENST00000408746 214 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.91□□□□□ -1.62
SF3A1Q15459 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.91□□□□□ -1.62
SF3A1Q15459 AL109913.1-201ENST00000421173 514 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC4.91□□□□□ -1.62
SF3A1Q15459 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.91□□□□□ -1.62
SF3A1Q15459 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC4.91□□□□□ -1.62
SF3A1Q15459 AC011998.1-201ENST00000433403 117 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 RPL23AP52-201ENST00000439311 478 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 AC069285.2-201ENST00000440210 275 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC4.91□□□□□ -1.62
SF3A1Q15459 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.91□□□□□ -1.62
SF3A1Q15459 RPS7P7-201ENST00000463499 571 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 RPL7L1P8-201ENST00000469911 741 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 AP001086.1-201ENST00000494882 321 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC4.91□□□□□ -1.62
SF3A1Q15459 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.91□□□□□ -1.62
SF3A1Q15459 RNA5SP154-201ENST00000516193 111 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 RNU6-1178P-201ENST00000516674 107 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 RNU6-835P-201ENST00000516974 104 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 RN7SKP92-201ENST00000517266 244 ntBASIC4.91□□□□□ -1.62
SF3A1Q15459 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms