Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AL590664.1-201ENST00000448065 339 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 AC007182.2-201ENST00000489251 402 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 KLRA1P-201ENST00000503499 986 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC1.69□□□□□ -2.14
CHD3Q12873 AC092470.1-201ENST00000546187 132 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 DNAJC19P9-201ENST00000555084 351 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.69□□□□□ -2.14
CHD3Q12873 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC1.69□□□□□ -2.14
CHD3Q12873 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CHD3Q12873 UBE2Q2P2-203ENST00000613592 761 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC1.69□□□□□ -2.14
CHD3Q12873 AC024595.1-201ENST00000623088 387 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CHD3Q12873 HSPE1P11-201ENST00000339579 310 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 AC073264.1-201ENST00000411508 416 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 TRAPPC2P4-201ENST00000421750 331 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC1.69□□□□□ -2.14
CHD3Q12873 RPL7P29-201ENST00000437151 728 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 SDR42E1P3-201ENST00000438345 502 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 ARL5AP3-201ENST00000439327 386 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CHD3Q12873 RNU7-26P-201ENST00000458980 63 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 AC005840.1-201ENST00000498412 377 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.69□□□□□ -2.14
CHD3Q12873 MED28P6-201ENST00000558776 231 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC1.69□□□□□ -2.14
CHD3Q12873 AC124283.4-201ENST00000581815 456 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC1.69□□□□□ -2.14
CHD3Q12873 MIR6132-201ENST00000622083 109 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 AC010872.1-201ENST00000624225 675 ntBASIC1.69□□□□□ -2.14
CHD3Q12873 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC1.68□□□□□ -2.14
CHD3Q12873 AL359851.1-201ENST00000569460 4997 ntBASIC1.68□□□□□ -2.14
CHD3Q12873 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.68□□□□□ -2.14
CHD3Q12873 MTND4P35-201ENST00000604257 1375 ntBASIC1.68□□□□□ -2.14
CHD3Q12873 RNU6-1197P-201ENST00000391183 107 ntBASIC1.68□□□□□ -2.14
CHD3Q12873 FGF7P8-201ENST00000402994 292 ntBASIC1.68□□□□□ -2.14
CHD3Q12873 AC092745.2-202ENST00000411880 369 ntBASIC1.68□□□□□ -2.14
CHD3Q12873 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
CHD3Q12873 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC1.68□□□□□ -2.14
CHD3Q12873 RABEPKP1-201ENST00000440529 1026 ntBASIC1.68□□□□□ -2.14
CHD3Q12873 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC1.68□□□□□ -2.14
CHD3Q12873 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC1.68□□□□□ -2.14
CHD3Q12873 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC1.68□□□□□ -2.14
CHD3Q12873 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.68□□□□□ -2.14
CHD3Q12873 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC1.68□□□□□ -2.14
CHD3Q12873 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.68□□□□□ -2.14
CHD3Q12873 AC010928.2-201ENST00000588017 287 ntBASIC1.68□□□□□ -2.14
CHD3Q12873 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.68□□□□□ -2.14
CHD3Q12873 SNRPGP19-201ENST00000603826 189 ntBASIC1.68□□□□□ -2.14
CHD3Q12873 AC009314.1-201ENST00000603871 304 ntBASIC1.68□□□□□ -2.14
CHD3Q12873 AC110792.4-201ENST00000609843 298 ntBASIC1.68□□□□□ -2.14
CHD3Q12873 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC1.68□□□□□ -2.14
CHD3Q12873 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
CHD3Q12873 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
CHD3Q12873 AL137003.2-201ENST00000606924 2538 ntBASIC1.68□□□□□ -2.14
CHD3Q12873 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC1.68□□□□□ -2.14
CHD3Q12873 SFR1P1-201ENST00000403720 688 ntBASIC1.67□□□□□ -2.14
CHD3Q12873 RNU6-193P-201ENST00000410977 107 ntBASIC1.67□□□□□ -2.14
CHD3Q12873 RPL7P30-201ENST00000420888 709 ntBASIC1.67□□□□□ -2.14
CHD3Q12873 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC1.67□□□□□ -2.14
CHD3Q12873 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC1.67□□□□□ -2.14
CHD3Q12873 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.67□□□□□ -2.14
CHD3Q12873 SNRPFP4-201ENST00000456366 242 ntBASIC1.67□□□□□ -2.14
CHD3Q12873 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
CHD3Q12873 AC016065.2-201ENST00000514530 444 ntBASIC1.67□□□□□ -2.14
CHD3Q12873 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC1.67□□□□□ -2.14
CHD3Q12873 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.67□□□□□ -2.14
CHD3Q12873 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.67□□□□□ -2.14
CHD3Q12873 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC1.67□□□□□ -2.14
CHD3Q12873 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC1.67□□□□□ -2.14
CHD3Q12873 SDR42E1P2-201ENST00000614861 481 ntBASIC1.67□□□□□ -2.14
CHD3Q12873 SDR42E1P4-201ENST00000620894 481 ntBASIC1.67□□□□□ -2.14
CHD3Q12873 AL589994.2-201ENST00000621124 579 ntBASIC1.67□□□□□ -2.14
CHD3Q12873 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
CHD3Q12873 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
CHD3Q12873 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.67□□□□□ -2.14
CHD3Q12873 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
CHD3Q12873 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC1.67□□□□□ -2.14
CHD3Q12873 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.67□□□□□ -2.14
CHD3Q12873 AP1B1P2-201ENST00000416196 106 ntBASIC1.67□□□□□ -2.14
CHD3Q12873 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC1.67□□□□□ -2.14
CHD3Q12873 RPL23AP76-201ENST00000441860 458 ntBASIC1.67□□□□□ -2.14
CHD3Q12873 RPS26P30-201ENST00000443431 335 ntBASIC1.67□□□□□ -2.14
CHD3Q12873 AC140059.1-201ENST00000489238 361 ntBASIC1.67□□□□□ -2.14
CHD3Q12873 HMGB1P47-201ENST00000511281 589 ntBASIC1.67□□□□□ -2.14
CHD3Q12873 AC117532.1-201ENST00000514638 323 ntBASIC1.67□□□□□ -2.14
CHD3Q12873 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC1.67□□□□□ -2.14
CHD3Q12873 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC1.67□□□□□ -2.14
CHD3Q12873 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC1.67□□□□□ -2.14
CHD3Q12873 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
CHD3Q12873 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
CHD3Q12873 MIR499A-201ENST00000384903 122 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 MIR1323-201ENST00000408090 73 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 RNU4-74P-201ENST00000411280 161 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 TOMM22P1-201ENST00000418578 312 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.66□□□□□ -2.14
CHD3Q12873 FO393419.3-201ENST00000428741 282 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 AL645638.1-201ENST00000440519 361 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 AC009296.1-201ENST00000443146 155 ntBASIC1.66□□□□□ -2.14
CHD3Q12873 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 197.1 ms