Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC1.02□□□□□ -2.25
PRKDCP78527 U3.40-201ENST00000408706 208 ntBASIC1.02□□□□□ -2.25
PRKDCP78527 AL445669.1-201ENST00000426743 755 ntBASIC1.02□□□□□ -2.25
PRKDCP78527 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC1.02□□□□□ -2.25
PRKDCP78527 AP000676.4-201ENST00000624659 623 ntBASIC1.02□□□□□ -2.25
PRKDCP78527 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
PRKDCP78527 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC1.02□□□□□ -2.25
PRKDCP78527 RPL35AP22-201ENST00000436855 335 ntBASIC1.02□□□□□ -2.25
PRKDCP78527 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC1.02□□□□□ -2.25
PRKDCP78527 AL078601.1-201ENST00000444542 271 ntBASIC1.02□□□□□ -2.25
PRKDCP78527 HMGB3P30-201ENST00000457863 606 ntBASIC1.02□□□□□ -2.25
PRKDCP78527 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC1.02□□□□□ -2.25
PRKDCP78527 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC1.02□□□□□ -2.25
PRKDCP78527 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC1.02□□□□□ -2.25
PRKDCP78527 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.02□□□□□ -2.25
PRKDCP78527 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.02□□□□□ -2.25
PRKDCP78527 SGO1P2-201ENST00000429458 1589 ntBASIC1.02□□□□□ -2.25
PRKDCP78527 AL118496.1-201ENST00000440201 1812 ntBASIC1.01□□□□□ -2.25
PRKDCP78527 HMGB1P5-201ENST00000255320 642 ntBASIC1.01□□□□□ -2.25
PRKDCP78527 VTRNA1-1-201ENST00000363120 99 ntBASIC1.01□□□□□ -2.25
PRKDCP78527 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC1.01□□□□□ -2.25
PRKDCP78527 AC009302.1-201ENST00000417147 390 ntBASIC1.01□□□□□ -2.25
PRKDCP78527 RPS26P56-201ENST00000444468 240 ntBASIC1.01□□□□□ -2.25
PRKDCP78527 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.01□□□□□ -2.25
PRKDCP78527 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC1.01□□□□□ -2.25
PRKDCP78527 RPL21P39-201ENST00000463605 483 ntBASIC1.01□□□□□ -2.25
PRKDCP78527 MTCYBP35-201ENST00000503630 1137 ntBASIC1.01□□□□□ -2.25
PRKDCP78527 AC006499.2-201ENST00000513470 337 ntBASIC1.01□□□□□ -2.25
PRKDCP78527 SNORA31.26-201ENST00000517250 137 ntBASIC1.01□□□□□ -2.25
PRKDCP78527 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC1.01□□□□□ -2.25
PRKDCP78527 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
PRKDCP78527 AL109741.2-201ENST00000455561 343 ntBASIC1.01□□□□□ -2.25
PRKDCP78527 RNU6-1132P-201ENST00000459214 107 ntBASIC1.01□□□□□ -2.25
PRKDCP78527 RNA5SP395-201ENST00000516567 118 ntBASIC1.01□□□□□ -2.25
PRKDCP78527 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC1.01□□□□□ -2.25
PRKDCP78527 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC1.01□□□□□ -2.25
PRKDCP78527 AC008133.2-201ENST00000624540 351 ntBASIC1.01□□□□□ -2.25
PRKDCP78527 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC1.01□□□□□ -2.25
PRKDCP78527 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
PRKDCP78527 SNORA16.1-201ENST00000364597 132 ntBASIC1.01□□□□□ -2.25
PRKDCP78527 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.01□□□□□ -2.25
PRKDCP78527 AC109583.1-201ENST00000432156 268 ntBASIC1.01□□□□□ -2.25
PRKDCP78527 AC090525.3-201ENST00000605601 189 ntBASIC1.01□□□□□ -2.25
PRKDCP78527 AK6-205ENST00000618980 483 ntTSL 2 BASIC1.01□□□□□ -2.25
PRKDCP78527 CNOT6LP1-201ENST00000559681 1462 ntBASIC1□□□□□ -2.25
PRKDCP78527 SUMO1P4-201ENST00000429430 302 ntBASIC1□□□□□ -2.25
PRKDCP78527 AC079776.3-201ENST00000450665 370 ntBASIC1□□□□□ -2.25
PRKDCP78527 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC1□□□□□ -2.25
PRKDCP78527 RNA5SP384-201ENST00000516615 116 ntBASIC1□□□□□ -2.25
PRKDCP78527 CR383656.8-201ENST00000549046 145 ntBASIC1□□□□□ -2.25
PRKDCP78527 ZNF192P1-203ENST00000565888 810 ntBASIC1□□□□□ -2.25
PRKDCP78527 SNORD39.2-201ENST00000579995 76 ntBASIC1□□□□□ -2.25
PRKDCP78527 AC010928.2-201ENST00000588017 287 ntBASIC1□□□□□ -2.25
PRKDCP78527 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC1□□□□□ -2.25
PRKDCP78527 AC067838.1-201ENST00000606064 577 ntBASIC1□□□□□ -2.25
PRKDCP78527 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC1□□□□□ -2.25
PRKDCP78527 MTND4P1-201ENST00000457501 1466 ntBASIC1□□□□□ -2.25
PRKDCP78527 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1□□□□□ -2.25
PRKDCP78527 RNU1-78P-201ENST00000391248 165 ntBASIC1□□□□□ -2.25
PRKDCP78527 RNU2-25P-201ENST00000411041 191 ntBASIC1□□□□□ -2.25
PRKDCP78527 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC1□□□□□ -2.25
PRKDCP78527 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1□□□□□ -2.25
PRKDCP78527 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC1□□□□□ -2.25
PRKDCP78527 AC073901.1-201ENST00000462471 408 ntBASIC1□□□□□ -2.25
PRKDCP78527 AC012181.1-201ENST00000479895 423 ntBASIC1□□□□□ -2.25
PRKDCP78527 PRELID2P1-201ENST00000552837 301 ntBASIC1□□□□□ -2.25
PRKDCP78527 HSPE1P3-201ENST00000559254 309 ntBASIC1□□□□□ -2.25
PRKDCP78527 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC1□□□□□ -2.25
PRKDCP78527 AL627230.5-201ENST00000619807 58 ntBASIC1□□□□□ -2.25
PRKDCP78527 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC1□□□□□ -2.25
PRKDCP78527 AC111188.2-201ENST00000529697 1387 ntBASIC1□□□□□ -2.25
PRKDCP78527 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1□□□□□ -2.25
PRKDCP78527 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC1□□□□□ -2.25
PRKDCP78527 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1□□□□□ -2.25
PRKDCP78527 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC1□□□□□ -2.25
PRKDCP78527 AC068714.1-201ENST00000559623 800 ntBASIC1□□□□□ -2.25
PRKDCP78527 AC068338.1-201ENST00000565567 176 ntBASIC1□□□□□ -2.25
PRKDCP78527 MAGOH2P-202ENST00000584384 429 ntBASIC1□□□□□ -2.25
PRKDCP78527 AL109653.1-201ENST00000603091 248 ntBASIC1□□□□□ -2.25
PRKDCP78527 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1□□□□□ -2.25
PRKDCP78527 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
PRKDCP78527 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
PRKDCP78527 SNRPEP2-201ENST00000397592 279 ntBASIC1□□□□□ -2.25
PRKDCP78527 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1□□□□□ -2.25
PRKDCP78527 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1□□□□□ -2.25
PRKDCP78527 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC1□□□□□ -2.25
PRKDCP78527 OFD1P12Y-201ENST00000427963 1207 ntBASIC1□□□□□ -2.25
PRKDCP78527 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC1□□□□□ -2.25
PRKDCP78527 AL157827.1-201ENST00000447622 132 ntBASIC1□□□□□ -2.25
PRKDCP78527 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC1□□□□□ -2.25
PRKDCP78527 MTCO1P30-201ENST00000515244 580 ntBASIC1□□□□□ -2.25
PRKDCP78527 AC036111.3-201ENST00000526389 112 ntBASIC1□□□□□ -2.25
PRKDCP78527 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
PRKDCP78527 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC0.99□□□□□ -2.25
PRKDCP78527 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC0.99□□□□□ -2.25
PRKDCP78527 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC0.99□□□□□ -2.25
PRKDCP78527 AC006270.2-201ENST00000578523 652 ntBASIC0.99□□□□□ -2.25
PRKDCP78527 AC123786.2-201ENST00000603459 275 ntBASIC0.99□□□□□ -2.25
PRKDCP78527 RPL23AP88-201ENST00000605759 454 ntBASIC0.99□□□□□ -2.25
PRKDCP78527 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms