Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC080100.1-201ENST00000624239 5356 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.08□□□□□ -2.08
FOXA1P55317 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
FOXA1P55317 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
FOXA1P55317 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
FOXA1P55317 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.08□□□□□ -2.08
FOXA1P55317 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
FOXA1P55317 RNA5SP338-201ENST00000410495 85 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 AC069282.1-201ENST00000411911 526 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 SEPT7P5-201ENST00000434048 306 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 SDR42E1P3-201ENST00000438345 502 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 PTGES3P1-201ENST00000439531 483 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 AC093155.1-201ENST00000440164 826 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
FOXA1P55317 AL645638.1-201ENST00000440519 361 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 VN1R10P-201ENST00000447106 875 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC2.08□□□□□ -2.08
FOXA1P55317 RNU6-717P-201ENST00000459076 104 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 AC092757.1-201ENST00000467293 467 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 RPL30P14-201ENST00000482744 348 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 KLRA1P-201ENST00000503499 986 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 AC016550.1-201ENST00000505348 785 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC2.08□□□□□ -2.08
FOXA1P55317 RNU6-1095P-201ENST00000516148 108 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 RNA5SP200-201ENST00000516360 103 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 AP003122.3-201ENST00000526316 255 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2.08□□□□□ -2.08
FOXA1P55317 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC2.08□□□□□ -2.08
FOXA1P55317 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC2.08□□□□□ -2.08
FOXA1P55317 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC2.08□□□□□ -2.08
FOXA1P55317 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.08□□□□□ -2.08
FOXA1P55317 AC079089.3-201ENST00000603094 673 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 AL133507.1-201ENST00000605269 557 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 AC124016.2-201ENST00000610058 665 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 AC106028.5-201ENST00000610332 395 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 AC011890.2-201ENST00000613393 294 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
FOXA1P55317 AC025034.2-201ENST00000623264 286 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 AC010149.2-201ENST00000637608 315 ntBASIC2.08□□□□□ -2.08
FOXA1P55317 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
FOXA1P55317 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.08□□□□□ -2.08
FOXA1P55317 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.08□□□□□ -2.08
FOXA1P55317 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.08□□□□□ -2.08
FOXA1P55317 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.07□□□□□ -2.08
FOXA1P55317 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
FOXA1P55317 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC2.07□□□□□ -2.08
FOXA1P55317 RNA5SP160-201ENST00000364866 120 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 RNU6-1180P-201ENST00000364935 107 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
FOXA1P55317 SNORD65.1-201ENST00000390889 71 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
FOXA1P55317 AL079342.2-201ENST00000403367 482 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 BTF3P7-201ENST00000407097 488 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC2.07□□□□□ -2.08
FOXA1P55317 RPL7P30-201ENST00000420888 709 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 HMGN2P30-201ENST00000423237 256 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 DPRXP1-201ENST00000426312 460 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 PSMA6P3-201ENST00000428242 164 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 AL035407.1-201ENST00000429211 571 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 MTCO1P3-201ENST00000429327 192 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.07□□□□□ -2.08
FOXA1P55317 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC2.07□□□□□ -2.08
FOXA1P55317 MTCYBP42-201ENST00000444653 1130 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC2.07□□□□□ -2.08
FOXA1P55317 RNA5SP310-201ENST00000459084 116 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC2.07□□□□□ -2.08
FOXA1P55317 OR4G11P-201ENST00000492842 939 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC2.07□□□□□ -2.08
FOXA1P55317 AC008716.1-201ENST00000511084 513 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 RNU1-104P-201ENST00000517280 175 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 AC026241.1-201ENST00000517873 2142 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC2.07□□□□□ -2.08
FOXA1P55317 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC2.07□□□□□ -2.08
FOXA1P55317 MTND1P36-201ENST00000522384 936 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 NDUFS5P6-201ENST00000529136 295 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 AC068339.2-201ENST00000534395 618 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
FOXA1P55317 AC009097.3-201ENST00000563557 1018 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 AC138915.2-201ENST00000569776 97 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 AC009163.5-201ENST00000575421 637 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 ISCA1P3-201ENST00000577104 373 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 MIR5708-201ENST00000579723 85 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 MIR4435-1-201ENST00000582552 80 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.07□□□□□ -2.08
FOXA1P55317 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.07□□□□□ -2.08
FOXA1P55317 AC020895.1-201ENST00000595362 272 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 AC068620.3-201ENST00000602749 560 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 AC007938.3-201ENST00000604965 623 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 AP002802.2-201ENST00000605877 235 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 AC026790.2-201ENST00000606282 430 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 MIR6076-201ENST00000617521 113 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 AC010975.3-201ENST00000618727 978 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.07□□□□□ -2.08
FOXA1P55317 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.07□□□□□ -2.08
FOXA1P55317 U6.101-201ENST00000637707 76 ntBASIC2.07□□□□□ -2.08
FOXA1P55317 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.07□□□□□ -2.08
FOXA1P55317 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
FOXA1P55317 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.07□□□□□ -2.08
FOXA1P55317 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.07□□□□□ -2.08
FOXA1P55317 RNU6-173P-201ENST00000364215 104 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms