Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 WASF1P1-201ENST00000447560 1131 ntBASIC2.55□□□□□ -2
RFX3P48380 snoU109.3-201ENST00000459477 145 ntBASIC2.55□□□□□ -2
RFX3P48380 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.55□□□□□ -2
RFX3P48380 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC2.55□□□□□ -2
RFX3P48380 SEM1P1-201ENST00000506694 209 ntBASIC2.55□□□□□ -2
RFX3P48380 HIGD1AP13-201ENST00000509878 289 ntBASIC2.55□□□□□ -2
RFX3P48380 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.55□□□□□ -2
RFX3P48380 RNU6-528P-201ENST00000516926 100 ntBASIC2.55□□□□□ -2
RFX3P48380 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.55□□□□□ -2
RFX3P48380 AC004486.1-201ENST00000546846 233 ntBASIC2.55□□□□□ -2
RFX3P48380 AC128657.1-201ENST00000549459 145 ntBASIC2.55□□□□□ -2
RFX3P48380 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC2.55□□□□□ -2
RFX3P48380 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.55□□□□□ -2
RFX3P48380 EIF4BP1-201ENST00000554881 351 ntBASIC2.55□□□□□ -2
RFX3P48380 AC090615.1-201ENST00000577519 154 ntBASIC2.55□□□□□ -2
RFX3P48380 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC2.55□□□□□ -2
RFX3P48380 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC2.55□□□□□ -2
RFX3P48380 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.55□□□□□ -2
RFX3P48380 RPL23AP78-201ENST00000599928 470 ntBASIC2.55□□□□□ -2
RFX3P48380 AC068313.1-201ENST00000604028 1008 ntBASIC2.55□□□□□ -2
RFX3P48380 AC069431.2-201ENST00000604149 1099 ntBASIC2.55□□□□□ -2
RFX3P48380 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC2.55□□□□□ -2
RFX3P48380 AL357080.1-201ENST00000617394 239 ntBASIC2.55□□□□□ -2
RFX3P48380 AL158163.2-201ENST00000619110 700 ntBASIC2.55□□□□□ -2
RFX3P48380 AC008443.7-201ENST00000622195 246 ntBASIC2.55□□□□□ -2
RFX3P48380 AC068880.5-201ENST00000624331 290 ntBASIC2.55□□□□□ -2
RFX3P48380 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC2.55□□□□□ -2
RFX3P48380 AL390862.1-201ENST00000635467 1469 ntBASIC2.55□□□□□ -2
RFX3P48380 OR4G2P-202ENST00000641004 1759 ntBASIC2.54□□□□□ -2
RFX3P48380 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.54□□□□□ -2
RFX3P48380 AC096644.4-201ENST00000563417 2912 ntBASIC2.54□□□□□ -2
RFX3P48380 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.54□□□□□ -2
RFX3P48380 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
RFX3P48380 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
RFX3P48380 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
RFX3P48380 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
RFX3P48380 MIR26A1-201ENST00000362205 77 ntBASIC2.54□□□□□ -2
RFX3P48380 RNU6-28P-201ENST00000362378 107 ntBASIC2.54□□□□□ -2
RFX3P48380 RNU6-1035P-201ENST00000384477 107 ntBASIC2.54□□□□□ -2
RFX3P48380 MIR592-201ENST00000384959 97 ntBASIC2.54□□□□□ -2
RFX3P48380 MIR514A1-201ENST00000385133 98 ntBASIC2.54□□□□□ -2
RFX3P48380 RNU6-1176P-201ENST00000390955 107 ntBASIC2.54□□□□□ -2
RFX3P48380 AL356057.2-201ENST00000403318 432 ntBASIC2.54□□□□□ -2
RFX3P48380 MTATP6P20-201ENST00000414147 562 ntBASIC2.54□□□□□ -2
RFX3P48380 TIMM9P2-201ENST00000419324 266 ntBASIC2.54□□□□□ -2
RFX3P48380 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC2.54□□□□□ -2
RFX3P48380 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.54□□□□□ -2
RFX3P48380 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.54□□□□□ -2
RFX3P48380 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
RFX3P48380 RPL23AP20-201ENST00000447965 421 ntBASIC2.54□□□□□ -2
RFX3P48380 AC092155.2-201ENST00000454675 477 ntBASIC2.54□□□□□ -2
RFX3P48380 AL049873.1-201ENST00000480540 376 ntBASIC2.54□□□□□ -2
RFX3P48380 AC006499.2-201ENST00000513470 337 ntBASIC2.54□□□□□ -2
RFX3P48380 AC090136.1-201ENST00000520009 240 ntBASIC2.54□□□□□ -2
RFX3P48380 AL355836.1-201ENST00000555951 870 ntBASIC2.54□□□□□ -2
RFX3P48380 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.54□□□□□ -2
RFX3P48380 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC2.54□□□□□ -2
RFX3P48380 AC010546.1-201ENST00000569391 485 ntBASIC2.54□□□□□ -2
RFX3P48380 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.54□□□□□ -2
RFX3P48380 MIR3670-2-201ENST00000582974 65 ntBASIC2.54□□□□□ -2
RFX3P48380 MIR3605-201ENST00000583214 100 ntBASIC2.54□□□□□ -2
RFX3P48380 MIR3670-1-201ENST00000584160 65 ntBASIC2.54□□□□□ -2
RFX3P48380 MIR3670-3-201ENST00000584855 65 ntBASIC2.54□□□□□ -2
RFX3P48380 AL137843.1-201ENST00000605078 385 ntBASIC2.54□□□□□ -2
RFX3P48380 AL158050.2-201ENST00000605336 568 ntBASIC2.54□□□□□ -2
RFX3P48380 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.54□□□□□ -2
RFX3P48380 MIR3670-4-201ENST00000612260 65 ntBASIC2.54□□□□□ -2
RFX3P48380 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.54□□□□□ -2
RFX3P48380 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC2.54□□□□□ -2
RFX3P48380 AC080100.1-201ENST00000624239 5356 ntBASIC2.54□□□□□ -2
RFX3P48380 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC2.53□□□□□ -2
RFX3P48380 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC2.53□□□□□ -2
RFX3P48380 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.53□□□□□ -2
RFX3P48380 AL672167.1-206ENST00000356293 943 ntBASIC2.53□□□□□ -2
RFX3P48380 NACA3P-201ENST00000359690 648 ntBASIC2.53□□□□□ -2
RFX3P48380 RNU6-343P-201ENST00000364709 104 ntBASIC2.53□□□□□ -2
RFX3P48380 RNU6-1180P-201ENST00000364935 107 ntBASIC2.53□□□□□ -2
RFX3P48380 Y_RNA.510-201ENST00000384511 114 ntBASIC2.53□□□□□ -2
RFX3P48380 MIR620-201ENST00000385232 95 ntBASIC2.53□□□□□ -2
RFX3P48380 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.53□□□□□ -2
RFX3P48380 AL031679.1-201ENST00000400616 525 ntBASIC2.53□□□□□ -2
RFX3P48380 MTND4P13-201ENST00000402078 1023 ntBASIC2.53□□□□□ -2
RFX3P48380 AL136310.1-201ENST00000404926 654 ntBASIC2.53□□□□□ -2
RFX3P48380 SNORA11.2-201ENST00000408318 127 ntBASIC2.53□□□□□ -2
RFX3P48380 RNA5SP80-201ENST00000410475 111 ntBASIC2.53□□□□□ -2
RFX3P48380 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.53□□□□□ -2
RFX3P48380 SPA17P1-201ENST00000416656 452 ntBASIC2.53□□□□□ -2
RFX3P48380 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.53□□□□□ -2
RFX3P48380 AC099548.1-201ENST00000421443 426 ntBASIC2.53□□□□□ -2
RFX3P48380 USP9YP11-201ENST00000427537 717 ntBASIC2.53□□□□□ -2
RFX3P48380 AL512844.2-201ENST00000433990 593 ntBASIC2.53□□□□□ -2
RFX3P48380 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC2.53□□□□□ -2
RFX3P48380 AC009296.1-201ENST00000443146 155 ntBASIC2.53□□□□□ -2
RFX3P48380 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.53□□□□□ -2
RFX3P48380 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC2.53□□□□□ -2
RFX3P48380 MTATP6P14-201ENST00000455189 673 ntBASIC2.53□□□□□ -2
RFX3P48380 FCF1P6-201ENST00000456841 595 ntBASIC2.53□□□□□ -2
RFX3P48380 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC2.53□□□□□ -2
RFX3P48380 AP001486.1-201ENST00000463339 476 ntBASIC2.53□□□□□ -2
RFX3P48380 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 273.3 ms