Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC068533.1-201ENST00000418542 415 ntBASIC4.22□□□□□ -1.73
MSX2P35548 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC4.22□□□□□ -1.73
MSX2P35548 RPL36AP6-201ENST00000435770 321 ntBASIC4.22□□□□□ -1.73
MSX2P35548 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.22□□□□□ -1.73
MSX2P35548 MRPS31P2-201ENST00000451581 518 ntBASIC4.22□□□□□ -1.73
MSX2P35548 AC009963.2-201ENST00000453431 138 ntBASIC4.22□□□□□ -1.73
MSX2P35548 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC4.22□□□□□ -1.73
MSX2P35548 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.22□□□□□ -1.73
MSX2P35548 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.22□□□□□ -1.73
MSX2P35548 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.22□□□□□ -1.73
MSX2P35548 RPL7P43-201ENST00000478876 753 ntBASIC4.22□□□□□ -1.73
MSX2P35548 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.22□□□□□ -1.73
MSX2P35548 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.22□□□□□ -1.73
MSX2P35548 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.22□□□□□ -1.73
MSX2P35548 PTP4A1P4-201ENST00000512479 322 ntBASIC4.22□□□□□ -1.73
MSX2P35548 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.22□□□□□ -1.73
MSX2P35548 SMURF2P1-201ENST00000514992 481 ntBASIC4.22□□□□□ -1.73
MSX2P35548 Y_RNA.720-201ENST00000517166 92 ntBASIC4.22□□□□□ -1.73
MSX2P35548 AC090136.1-201ENST00000520009 240 ntBASIC4.22□□□□□ -1.73
MSX2P35548 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.22□□□□□ -1.73
MSX2P35548 AL137161.1-201ENST00000532231 390 ntBASIC4.22□□□□□ -1.73
MSX2P35548 AP001880.2-201ENST00000538233 448 ntBASIC4.22□□□□□ -1.73
MSX2P35548 IMMP1LP2-201ENST00000552954 492 ntBASIC4.22□□□□□ -1.73
MSX2P35548 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC4.22□□□□□ -1.73
MSX2P35548 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.22□□□□□ -1.73
MSX2P35548 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC4.22□□□□□ -1.73
MSX2P35548 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.22□□□□□ -1.73
MSX2P35548 AP000654.2-201ENST00000605633 586 ntBASIC4.22□□□□□ -1.73
MSX2P35548 RNA5SP108-201ENST00000605921 117 ntBASIC4.22□□□□□ -1.73
MSX2P35548 AC022893.3-201ENST00000607665 437 ntBASIC4.22□□□□□ -1.73
MSX2P35548 AC006065.5-201ENST00000623427 349 ntBASIC4.22□□□□□ -1.73
MSX2P35548 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.22□□□□□ -1.73
MSX2P35548 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
MSX2P35548 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.22□□□□□ -1.73
MSX2P35548 AL136964.1-201ENST00000622038 2990 ntBASIC4.22□□□□□ -1.73
MSX2P35548 AC027290.2-201ENST00000623210 18662 ntBASIC4.22□□□□□ -1.73
MSX2P35548 BDP1P-201ENST00000582658 1990 ntBASIC4.22□□□□□ -1.73
MSX2P35548 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
MSX2P35548 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
MSX2P35548 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
MSX2P35548 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
MSX2P35548 AC018529.3-201ENST00000624212 2254 ntBASIC4.21□□□□□ -1.73
MSX2P35548 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.21□□□□□ -1.73
MSX2P35548 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
MSX2P35548 AC026951.1-201ENST00000559530 2459 ntBASIC4.21□□□□□ -1.73
MSX2P35548 ZNF734P-201ENST00000419494 1534 ntBASIC4.21□□□□□ -1.73
MSX2P35548 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
MSX2P35548 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.21□□□□□ -1.74
MSX2P35548 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
MSX2P35548 RPL32P3-201ENST00000359025 275 ntBASIC4.21□□□□□ -1.74
MSX2P35548 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
MSX2P35548 RNU6-1252P-201ENST00000363054 104 ntBASIC4.21□□□□□ -1.74
MSX2P35548 Y_RNA.112-201ENST00000363250 102 ntBASIC4.21□□□□□ -1.74
MSX2P35548 RNU6-1309P-201ENST00000363305 108 ntBASIC4.21□□□□□ -1.74
MSX2P35548 SNORD113-7-201ENST00000363762 77 ntBASIC4.21□□□□□ -1.74
MSX2P35548 RNU6-1188P-201ENST00000363795 107 ntBASIC4.21□□□□□ -1.74
MSX2P35548 RNU6-61P-201ENST00000365528 109 ntBASIC4.21□□□□□ -1.74
MSX2P35548 SNORA24.1-201ENST00000384401 135 ntBASIC4.21□□□□□ -1.74
MSX2P35548 MIR1911-201ENST00000410783 80 ntBASIC4.21□□□□□ -1.74
MSX2P35548 RPS20P14-201ENST00000412545 360 ntBASIC4.21□□□□□ -1.74
MSX2P35548 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.21□□□□□ -1.74
MSX2P35548 AC114491.1-201ENST00000416095 246 ntBASIC4.21□□□□□ -1.74
MSX2P35548 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.21□□□□□ -1.74
MSX2P35548 CKS1BP5-201ENST00000434172 273 ntBASIC4.21□□□□□ -1.74
MSX2P35548 ELOCP18-201ENST00000434209 337 ntBASIC4.21□□□□□ -1.74
MSX2P35548 FABP5P14-201ENST00000437273 393 ntBASIC4.21□□□□□ -1.74
MSX2P35548 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC4.21□□□□□ -1.74
MSX2P35548 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.21□□□□□ -1.74
MSX2P35548 RPL23AP43-201ENST00000446445 471 ntBASIC4.21□□□□□ -1.74
MSX2P35548 RPS17P13-201ENST00000448974 407 ntBASIC4.21□□□□□ -1.74
MSX2P35548 AC012671.1-201ENST00000451912 203 ntBASIC4.21□□□□□ -1.74
MSX2P35548 ELOCP24-201ENST00000456370 334 ntBASIC4.21□□□□□ -1.74
MSX2P35548 SNORD108-201ENST00000459332 71 ntBASIC4.21□□□□□ -1.74
MSX2P35548 RPL35AP28-201ENST00000459730 331 ntBASIC4.21□□□□□ -1.74
MSX2P35548 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.21□□□□□ -1.74
MSX2P35548 TRBVA-201ENST00000498804 316 ntBASIC4.21□□□□□ -1.74
MSX2P35548 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC4.21□□□□□ -1.74
MSX2P35548 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.21□□□□□ -1.74
MSX2P35548 RN7SKP24-201ENST00000515888 284 ntBASIC4.21□□□□□ -1.74
MSX2P35548 RNU6-1137P-201ENST00000517073 99 ntBASIC4.21□□□□□ -1.74
MSX2P35548 RNU6-64P-201ENST00000517119 105 ntBASIC4.21□□□□□ -1.74
MSX2P35548 RNA5SP454-201ENST00000517231 127 ntBASIC4.21□□□□□ -1.74
MSX2P35548 CDH12P4-201ENST00000517835 295 ntBASIC4.21□□□□□ -1.74
MSX2P35548 CDH12P3-201ENST00000517935 295 ntBASIC4.21□□□□□ -1.74
MSX2P35548 CDH12P1-201ENST00000518435 295 ntBASIC4.21□□□□□ -1.74
MSX2P35548 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC4.21□□□□□ -1.74
MSX2P35548 FAM60DP-201ENST00000524174 632 ntBASIC4.21□□□□□ -1.74
MSX2P35548 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.21□□□□□ -1.74
MSX2P35548 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.21□□□□□ -1.74
MSX2P35548 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.21□□□□□ -1.74
MSX2P35548 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
MSX2P35548 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
MSX2P35548 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.21□□□□□ -1.74
MSX2P35548 MIR4790-201ENST00000577799 79 ntBASIC4.21□□□□□ -1.74
MSX2P35548 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC4.21□□□□□ -1.74
MSX2P35548 MIR4436B2-201ENST00000581415 91 ntBASIC4.21□□□□□ -1.74
MSX2P35548 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.21□□□□□ -1.74
MSX2P35548 MIR4436B1-201ENST00000583272 91 ntBASIC4.21□□□□□ -1.74
MSX2P35548 MIR3672-201ENST00000584290 82 ntBASIC4.21□□□□□ -1.74
MSX2P35548 MIR4293-201ENST00000584305 78 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 134.9 ms