Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC4.34□□□□□ -1.71
SMARCA1P28370 RPL31P13-201ENST00000484151 370 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 AP001086.1-201ENST00000494882 321 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 UBE2CP3-201ENST00000502715 450 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SMARCA1P28370 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC4.34□□□□□ -1.71
SMARCA1P28370 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC4.34□□□□□ -1.71
SMARCA1P28370 AC090572.1-201ENST00000519251 160 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.34□□□□□ -1.71
SMARCA1P28370 AP001429.1-201ENST00000602568 530 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 XIAPP1-201ENST00000603162 600 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 AP000907.4-201ENST00000604143 237 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 AL031176.1-201ENST00000604554 466 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 AP001596.2-201ENST00000608410 312 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 AC139792.3-201ENST00000623525 224 ntBASIC4.34□□□□□ -1.71
SMARCA1P28370 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.34□□□□□ -1.71
SMARCA1P28370 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SMARCA1P28370 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.34□□□□□ -1.71
SMARCA1P28370 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
SMARCA1P28370 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SMARCA1P28370 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
SMARCA1P28370 FAM35DP-201ENST00000323387 2712 ntBASIC4.34□□□□□ -1.72
SMARCA1P28370 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.34□□□□□ -1.72
SMARCA1P28370 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
SMARCA1P28370 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.34□□□□□ -1.72
SMARCA1P28370 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.33□□□□□ -1.72
SMARCA1P28370 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
SMARCA1P28370 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.33□□□□□ -1.72
SMARCA1P28370 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SMARCA1P28370 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.33□□□□□ -1.72
SMARCA1P28370 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.33□□□□□ -1.72
SMARCA1P28370 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SMARCA1P28370 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SMARCA1P28370 RNU6-1085P-201ENST00000363576 107 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 RNA5SP235-201ENST00000365411 114 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC4.33□□□□□ -1.72
SMARCA1P28370 Y_RNA.402-201ENST00000383972 102 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 RNU6-1181P-201ENST00000384191 106 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 Y_RNA.453-201ENST00000384223 109 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 SOD2P1-201ENST00000396543 562 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 RNU6ATAC-201ENST00000408749 126 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 ELOCP14-201ENST00000428070 331 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 RPS15AP9-201ENST00000439856 381 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 ELOCP7-201ENST00000439968 331 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 NFU1P2-201ENST00000448700 469 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.33□□□□□ -1.72
SMARCA1P28370 AC007967.1-201ENST00000455422 1159 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 snoU13.24-201ENST00000458998 104 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 RPL9P32-201ENST00000464118 620 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC4.33□□□□□ -1.72
SMARCA1P28370 TRBV12-2-201ENST00000489763 344 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 HMGB1P22-201ENST00000505315 124 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 Y_RNA.693-201ENST00000516641 110 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 RN7SKP209-201ENST00000516888 304 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC4.33□□□□□ -1.72
SMARCA1P28370 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.33□□□□□ -1.72
SMARCA1P28370 AP000857.1-201ENST00000532151 543 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.33□□□□□ -1.72
SMARCA1P28370 AC018630.1-201ENST00000541376 925 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.33□□□□□ -1.72
SMARCA1P28370 AC126177.3-201ENST00000551839 688 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 AL512360.1-201ENST00000555346 234 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 AL133153.1-201ENST00000557756 303 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 AL360157.1-201ENST00000565962 87 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 AC068135.2-201ENST00000569293 1028 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC4.33□□□□□ -1.72
SMARCA1P28370 BNIP3P33-201ENST00000598912 569 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 AC007687.1-201ENST00000602704 304 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 AC012507.3-201ENST00000603556 477 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 AC103710.2-201ENST00000609912 942 ntBASIC4.33□□□□□ -1.72
SMARCA1P28370 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.33□□□□□ -1.72
SMARCA1P28370 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.33□□□□□ -1.72
SMARCA1P28370 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.33□□□□□ -1.72
SMARCA1P28370 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SMARCA1P28370 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SMARCA1P28370 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
SMARCA1P28370 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SMARCA1P28370 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC4.32□□□□□ -1.72
SMARCA1P28370 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.32□□□□□ -1.72
SMARCA1P28370 Y_RNA.88-201ENST00000363029 99 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 RNU6-483P-201ENST00000384088 108 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 RNU6-456P-201ENST00000384493 107 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 MIR554-201ENST00000384874 96 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 MIR607-201ENST00000385241 96 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 AL590704.1-201ENST00000402856 794 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 TOMM22P1-201ENST00000418578 312 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.32□□□□□ -1.72
SMARCA1P28370 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC4.32□□□□□ -1.72
SMARCA1P28370 AL662791.1-201ENST00000441992 928 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 WASF1P1-201ENST00000447560 1131 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 RPL23AP20-201ENST00000447965 421 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 CEACAMP4-201ENST00000457676 421 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 AC091153.1-201ENST00000466297 402 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC4.32□□□□□ -1.72
SMARCA1P28370 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC4.32□□□□□ -1.72
SMARCA1P28370 AC114797.1-201ENST00000514003 728 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC4.32□□□□□ -1.72
SMARCA1P28370 RNU6-1095P-201ENST00000516148 108 ntBASIC4.32□□□□□ -1.72
SMARCA1P28370 SCARNA24.1-201ENST00000516465 137 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 146.2 ms