Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 snoU109.1-201ENST00000459339 135 ntBASIC3.35□□□□□ -1.87
MSH3P20585 AC096751.1-202ENST00000502691 1067 ntBASIC3.35□□□□□ -1.87
MSH3P20585 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.35□□□□□ -1.87
MSH3P20585 AC109464.2-201ENST00000510242 943 ntBASIC3.35□□□□□ -1.87
MSH3P20585 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.35□□□□□ -1.87
MSH3P20585 RNU6-720P-201ENST00000516363 108 ntBASIC3.35□□□□□ -1.87
MSH3P20585 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.35□□□□□ -1.87
MSH3P20585 IGHV3-76-201ENST00000522465 295 ntBASIC3.35□□□□□ -1.87
MSH3P20585 MTCYBP20-201ENST00000524239 1129 ntBASIC3.35□□□□□ -1.87
MSH3P20585 AC004024.1-201ENST00000549244 247 ntBASIC3.35□□□□□ -1.87
MSH3P20585 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.35□□□□□ -1.87
MSH3P20585 NCAPGP2-201ENST00000557911 754 ntBASIC3.35□□□□□ -1.87
MSH3P20585 AL845331.3-202ENST00000562856 261 ntBASIC3.35□□□□□ -1.87
MSH3P20585 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.35□□□□□ -1.87
MSH3P20585 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC3.35□□□□□ -1.87
MSH3P20585 UBE2L4-201ENST00000587688 464 ntBASIC3.35□□□□□ -1.87
MSH3P20585 NDUFA8P1-201ENST00000605525 367 ntBASIC3.35□□□□□ -1.87
MSH3P20585 AC006566.1-201ENST00000608943 513 ntBASIC3.35□□□□□ -1.87
MSH3P20585 AL589743.7-201ENST00000612637 233 ntBASIC3.35□□□□□ -1.87
MSH3P20585 AC015540.1-201ENST00000615828 501 ntBASIC3.35□□□□□ -1.87
MSH3P20585 AL158801.5-201ENST00000623123 465 ntBASIC3.35□□□□□ -1.87
MSH3P20585 AL359740.1-201ENST00000624340 592 ntBASIC3.35□□□□□ -1.87
MSH3P20585 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.35□□□□□ -1.87
MSH3P20585 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.35□□□□□ -1.87
MSH3P20585 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.35□□□□□ -1.87
MSH3P20585 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.87
MSH3P20585 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
MSH3P20585 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
MSH3P20585 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
MSH3P20585 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
MSH3P20585 MIR183-201ENST00000384958 110 ntBASIC3.34□□□□□ -1.87
MSH3P20585 RNU6-192P-201ENST00000391253 100 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC3.34□□□□□ -1.87
MSH3P20585 AC078974.1-201ENST00000411597 223 ntBASIC3.34□□□□□ -1.87
MSH3P20585 RPS3AP3-201ENST00000411933 242 ntBASIC3.34□□□□□ -1.87
MSH3P20585 BX323014.1-201ENST00000412876 237 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.34□□□□□ -1.87
MSH3P20585 AC010975.2-201ENST00000427781 588 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.34□□□□□ -1.87
MSH3P20585 AL159987.2-201ENST00000432754 307 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.34□□□□□ -1.87
MSH3P20585 AC005019.1-201ENST00000436455 431 ntBASIC3.34□□□□□ -1.87
MSH3P20585 RPL22P17-201ENST00000438729 315 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AC244505.5-201ENST00000443639 207 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AC112653.1-201ENST00000443851 386 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.34□□□□□ -1.87
MSH3P20585 AL358232.1-201ENST00000448030 501 ntBASIC3.34□□□□□ -1.87
MSH3P20585 MTCYBP1-201ENST00000454315 1119 ntBASIC3.34□□□□□ -1.87
MSH3P20585 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.34□□□□□ -1.87
MSH3P20585 AC011825.1-201ENST00000484967 388 ntBASIC3.34□□□□□ -1.87
MSH3P20585 CDC42P4-201ENST00000510507 563 ntBASIC3.34□□□□□ -1.87
MSH3P20585 RNU6-201P-201ENST00000517100 61 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AP003467.2-201ENST00000520175 319 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AP003122.4-201ENST00000530980 758 ntBASIC3.34□□□□□ -1.87
MSH3P20585 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.34□□□□□ -1.87
MSH3P20585 SETP2-201ENST00000553886 926 ntBASIC3.34□□□□□ -1.87
MSH3P20585 RPL21P5-201ENST00000554662 472 ntBASIC3.34□□□□□ -1.87
MSH3P20585 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.34□□□□□ -1.87
MSH3P20585 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.34□□□□□ -1.87
MSH3P20585 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.34□□□□□ -1.87
MSH3P20585 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC3.34□□□□□ -1.87
MSH3P20585 AC015917.1-201ENST00000579654 510 ntBASIC3.34□□□□□ -1.87
MSH3P20585 MIR3690-201ENST00000580266 75 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.34□□□□□ -1.87
MSH3P20585 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.34□□□□□ -1.87
MSH3P20585 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.34□□□□□ -1.87
MSH3P20585 AC091805.2-201ENST00000603848 235 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AL359999.1-201ENST00000604513 294 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AC055876.5-201ENST00000605667 259 ntBASIC3.34□□□□□ -1.87
MSH3P20585 OR10AB1P-201ENST00000609613 938 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AC005332.10-201ENST00000612725 619 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AL590099.1-201ENST00000615276 138 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AP001506.1-201ENST00000615444 211 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AC018755.4-201ENST00000619715 454 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AC099842.1-201ENST00000619919 596 ntBASIC3.34□□□□□ -1.87
MSH3P20585 AC002550.2-201ENST00000621246 394 ntBASIC3.34□□□□□ -1.87
MSH3P20585 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.34□□□□□ -1.87
MSH3P20585 SNORA50A-202ENST00000629536 136 ntBASIC3.34□□□□□ -1.87
MSH3P20585 U6.105-201ENST00000637379 88 ntBASIC3.34□□□□□ -1.87
MSH3P20585 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
MSH3P20585 MTND4P5-201ENST00000435821 1374 ntBASIC3.34□□□□□ -1.88
MSH3P20585 AL049781.1-201ENST00000623195 3585 ntBASIC3.34□□□□□ -1.88
MSH3P20585 AP001350.1-201ENST00000601906 1524 ntBASIC3.34□□□□□ -1.88
MSH3P20585 MTND5P29-201ENST00000458676 1807 ntBASIC3.33□□□□□ -1.88
MSH3P20585 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
MSH3P20585 AC007496.3-201ENST00000624987 3443 ntBASIC3.33□□□□□ -1.88
MSH3P20585 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
MSH3P20585 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.33□□□□□ -1.88
MSH3P20585 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
MSH3P20585 SNORA51.2-201ENST00000364595 132 ntBASIC3.33□□□□□ -1.88
MSH3P20585 U3.20-201ENST00000390909 217 ntBASIC3.33□□□□□ -1.88
MSH3P20585 RNA5SP171-201ENST00000391071 115 ntBASIC3.33□□□□□ -1.88
MSH3P20585 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
MSH3P20585 RNU2-47P-201ENST00000410649 186 ntBASIC3.33□□□□□ -1.88
MSH3P20585 RNU2-66P-201ENST00000410650 161 ntBASIC3.33□□□□□ -1.88
MSH3P20585 RNA5SP107-201ENST00000411358 122 ntBASIC3.33□□□□□ -1.88
MSH3P20585 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.33□□□□□ -1.88
MSH3P20585 AL031779.1-201ENST00000415663 330 ntBASIC3.33□□□□□ -1.88
MSH3P20585 AL356968.1-201ENST00000416622 474 ntBASIC3.33□□□□□ -1.88
MSH3P20585 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms