Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MIR3935-201ENST00000583472 104 ntBASIC1.31□□□□□ -2.2
VCANP13611 DUXAP9-208ENST00000622815 614 ntBASIC1.31□□□□□ -2.2
VCANP13611 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC1.31□□□□□ -2.2
VCANP13611 MTND4P31-201ENST00000425607 1343 ntBASIC1.31□□□□□ -2.2
VCANP13611 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
VCANP13611 JTBP1-201ENST00000441314 247 ntBASIC1.31□□□□□ -2.2
VCANP13611 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC1.31□□□□□ -2.2
VCANP13611 AC068338.1-201ENST00000565567 176 ntBASIC1.31□□□□□ -2.2
VCANP13611 AC099778.2-201ENST00000610904 211 ntBASIC1.31□□□□□ -2.2
VCANP13611 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC1.31□□□□□ -2.2
VCANP13611 MIR1197-201ENST00000408818 88 ntBASIC1.31□□□□□ -2.2
VCANP13611 AL512504.1-201ENST00000415494 778 ntBASIC1.31□□□□□ -2.2
VCANP13611 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.31□□□□□ -2.2
VCANP13611 AC110792.2-201ENST00000510278 224 ntBASIC1.31□□□□□ -2.2
VCANP13611 SNORA31.15-201ENST00000516771 132 ntBASIC1.31□□□□□ -2.2
VCANP13611 RNU11-2P-201ENST00000516898 142 ntBASIC1.31□□□□□ -2.2
VCANP13611 AC104986.1-201ENST00000517978 436 ntBASIC1.31□□□□□ -2.2
VCANP13611 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC1.31□□□□□ -2.2
VCANP13611 AP003497.1-201ENST00000528472 562 ntBASIC1.3□□□□□ -2.2
VCANP13611 MIR758-201ENST00000390227 88 ntBASIC1.3□□□□□ -2.2
VCANP13611 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC1.3□□□□□ -2.2
VCANP13611 AL049830.2-201ENST00000480072 201 ntBASIC1.3□□□□□ -2.2
VCANP13611 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC1.3□□□□□ -2.2
VCANP13611 GAS5-AS1-201ENST00000602767 694 ntBASIC1.3□□□□□ -2.2
VCANP13611 AL590099.1-201ENST00000615276 138 ntBASIC1.3□□□□□ -2.2
VCANP13611 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC1.3□□□□□ -2.2
VCANP13611 MIR330-201ENST00000362196 94 ntBASIC1.3□□□□□ -2.2
VCANP13611 SNORD114-23-201ENST00000363536 72 ntBASIC1.3□□□□□ -2.2
VCANP13611 SNORD121B-201ENST00000458838 81 ntBASIC1.3□□□□□ -2.2
VCANP13611 AL135786.2-201ENST00000608422 615 ntBASIC1.3□□□□□ -2.2
VCANP13611 MIR8087-201ENST00000612745 78 ntBASIC1.3□□□□□ -2.2
VCANP13611 AC104307.1-201ENST00000616142 196 ntBASIC1.3□□□□□ -2.2
VCANP13611 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
VCANP13611 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
VCANP13611 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
VCANP13611 RNU6-328P-201ENST00000390887 106 ntBASIC1.29□□□□□ -2.2
VCANP13611 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC1.29□□□□□ -2.2
VCANP13611 ATG10-AS1-201ENST00000504846 648 ntBASIC1.29□□□□□ -2.2
VCANP13611 IMMP1LP2-201ENST00000552954 492 ntBASIC1.29□□□□□ -2.2
VCANP13611 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC1.29□□□□□ -2.2
VCANP13611 Y_RNA.280-201ENST00000364765 112 ntBASIC1.29□□□□□ -2.2
VCANP13611 CBX3P6-201ENST00000430257 527 ntBASIC1.29□□□□□ -2.2
VCANP13611 AL031659.1-201ENST00000447075 539 ntBASIC1.29□□□□□ -2.2
VCANP13611 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC1.29□□□□□ -2.2
VCANP13611 AP000560.1-201ENST00000624150 1937 ntBASIC1.29□□□□□ -2.2
VCANP13611 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.28□□□□□ -2.2
VCANP13611 AC034268.2-201ENST00000571784 482 ntBASIC1.28□□□□□ -2.2
VCANP13611 BX322635.1-201ENST00000605804 496 ntBASIC1.28□□□□□ -2.2
VCANP13611 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
VCANP13611 DEFB108F-201ENST00000344638 222 ntBASIC1.28□□□□□ -2.2
VCANP13611 AC016769.3-201ENST00000396562 315 ntBASIC1.28□□□□□ -2.2
VCANP13611 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.28□□□□□ -2.2
VCANP13611 AL109741.2-201ENST00000455561 343 ntBASIC1.28□□□□□ -2.2
VCANP13611 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC1.28□□□□□ -2.2
VCANP13611 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC1.28□□□□□ -2.2
VCANP13611 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.28□□□□□ -2.2
VCANP13611 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC1.28□□□□□ -2.2
VCANP13611 AP001029.3-201ENST00000588063 596 ntBASIC1.28□□□□□ -2.2
VCANP13611 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
VCANP13611 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC1.28□□□□□ -2.21
VCANP13611 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC1.28□□□□□ -2.21
VCANP13611 MTND5P4-201ENST00000514978 288 ntBASIC1.28□□□□□ -2.21
VCANP13611 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC1.28□□□□□ -2.21
VCANP13611 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
VCANP13611 AC099548.1-201ENST00000421443 426 ntBASIC1.27□□□□□ -2.21
VCANP13611 Z85994.2-201ENST00000434327 452 ntBASIC1.27□□□□□ -2.21
VCANP13611 MTCYBP35-201ENST00000503630 1137 ntBASIC1.27□□□□□ -2.21
VCANP13611 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
VCANP13611 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
VCANP13611 RNU2-25P-201ENST00000411041 191 ntBASIC1.27□□□□□ -2.21
VCANP13611 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC1.27□□□□□ -2.21
VCANP13611 AC006499.2-201ENST00000513470 337 ntBASIC1.27□□□□□ -2.21
VCANP13611 AC104115.2-201ENST00000523026 687 ntBASIC1.27□□□□□ -2.21
VCANP13611 CBX3P2-202ENST00000583365 535 ntBASIC1.27□□□□□ -2.21
VCANP13611 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.27□□□□□ -2.21
VCANP13611 AL049779.4-201ENST00000604500 156 ntBASIC1.27□□□□□ -2.21
VCANP13611 SNORD6-201ENST00000365444 73 ntBASIC1.27□□□□□ -2.21
VCANP13611 RPL27AP8-201ENST00000424277 446 ntBASIC1.27□□□□□ -2.21
VCANP13611 CST2P1-201ENST00000425770 87 ntBASIC1.27□□□□□ -2.21
VCANP13611 AC118942.1-201ENST00000529674 1035 ntBASIC1.27□□□□□ -2.21
VCANP13611 AL121594.5-201ENST00000631724 573 ntBASIC1.27□□□□□ -2.21
VCANP13611 MIR924-201ENST00000638017 53 ntBASIC1.27□□□□□ -2.21
VCANP13611 Y_RNA.549-201ENST00000384657 102 ntBASIC1.26□□□□□ -2.21
VCANP13611 Z86062.1-201ENST00000406773 777 ntBASIC1.26□□□□□ -2.21
VCANP13611 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.26□□□□□ -2.21
VCANP13611 AL096701.2-201ENST00000416920 238 ntBASIC1.26□□□□□ -2.21
VCANP13611 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC1.26□□□□□ -2.21
VCANP13611 VN1R107P-201ENST00000601784 209 ntBASIC1.26□□□□□ -2.21
VCANP13611 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC1.26□□□□□ -2.21
VCANP13611 MIR1304-201ENST00000408243 91 ntBASIC1.26□□□□□ -2.21
VCANP13611 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC1.26□□□□□ -2.21
VCANP13611 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.26□□□□□ -2.21
VCANP13611 AC025755.1-201ENST00000521306 278 ntBASIC1.26□□□□□ -2.21
VCANP13611 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.25□□□□□ -2.21
VCANP13611 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC1.25□□□□□ -2.21
VCANP13611 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC1.25□□□□□ -2.21
VCANP13611 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
VCANP13611 U8.9-201ENST00000365667 134 ntBASIC1.25□□□□□ -2.21
VCANP13611 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC1.25□□□□□ -2.21
VCANP13611 AC000111.3-201ENST00000433478 193 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms