Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL596276.1-201ENST00000434465 418 ntBASIC1.45□□□□□ -2.18
COL6A3P12111 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.45□□□□□ -2.18
COL6A3P12111 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
COL6A3P12111 AC008080.4-202ENST00000440034 1005 ntTSL 3 BASIC1.45□□□□□ -2.18
COL6A3P12111 SNORA31.26-201ENST00000517250 137 ntBASIC1.45□□□□□ -2.18
COL6A3P12111 AC007687.1-201ENST00000602704 304 ntBASIC1.45□□□□□ -2.18
COL6A3P12111 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
COL6A3P12111 RNY4P3-201ENST00000365254 95 ntBASIC1.44□□□□□ -2.18
COL6A3P12111 AL030996.1-201ENST00000411430 235 ntBASIC1.44□□□□□ -2.18
COL6A3P12111 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC1.44□□□□□ -2.18
COL6A3P12111 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC1.44□□□□□ -2.18
COL6A3P12111 MIRLET7G-201ENST00000362280 84 ntBASIC1.44□□□□□ -2.18
COL6A3P12111 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC1.44□□□□□ -2.18
COL6A3P12111 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.44□□□□□ -2.18
COL6A3P12111 AL445687.1-201ENST00000439946 251 ntBASIC1.44□□□□□ -2.18
COL6A3P12111 AC005912.1-201ENST00000495392 255 ntBASIC1.44□□□□□ -2.18
COL6A3P12111 HAUS1P1-201ENST00000505275 832 ntBASIC1.44□□□□□ -2.18
COL6A3P12111 AC110792.2-201ENST00000510278 224 ntBASIC1.44□□□□□ -2.18
COL6A3P12111 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC1.44□□□□□ -2.18
COL6A3P12111 AC139103.1-201ENST00000534696 1030 ntBASIC1.44□□□□□ -2.18
COL6A3P12111 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.44□□□□□ -2.18
COL6A3P12111 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC1.43□□□□□ -2.18
COL6A3P12111 SNORD48-201ENST00000364953 64 ntBASIC1.43□□□□□ -2.18
COL6A3P12111 AF274854.1-201ENST00000413236 615 ntBASIC1.43□□□□□ -2.18
COL6A3P12111 RNF6P1-201ENST00000444889 1784 ntBASIC1.43□□□□□ -2.18
COL6A3P12111 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.43□□□□□ -2.18
COL6A3P12111 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC1.43□□□□□ -2.18
COL6A3P12111 AC012557.2-201ENST00000605919 418 ntBASIC1.43□□□□□ -2.18
COL6A3P12111 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
COL6A3P12111 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC1.43□□□□□ -2.18
COL6A3P12111 USP9YP7-201ENST00000436723 430 ntBASIC1.43□□□□□ -2.18
COL6A3P12111 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC1.43□□□□□ -2.18
COL6A3P12111 USP9YP32-201ENST00000452432 430 ntBASIC1.43□□□□□ -2.18
COL6A3P12111 HMGN1P28-201ENST00000521340 364 ntBASIC1.43□□□□□ -2.18
COL6A3P12111 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
COL6A3P12111 HSPE1P3-201ENST00000559254 309 ntBASIC1.43□□□□□ -2.18
COL6A3P12111 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.43□□□□□ -2.18
COL6A3P12111 AC074140.1-201ENST00000621617 208 ntBASIC1.43□□□□□ -2.18
COL6A3P12111 AC110491.1-201ENST00000562191 2010 ntBASIC1.43□□□□□ -2.18
COL6A3P12111 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC1.43□□□□□ -2.18
COL6A3P12111 Y_RNA.571-201ENST00000384753 98 ntBASIC1.43□□□□□ -2.18
COL6A3P12111 TPT1P14-201ENST00000448018 505 ntBASIC1.43□□□□□ -2.18
COL6A3P12111 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC1.43□□□□□ -2.18
COL6A3P12111 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
COL6A3P12111 BNIP3P26-201ENST00000600827 554 ntBASIC1.43□□□□□ -2.18
COL6A3P12111 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.42□□□□□ -2.18
COL6A3P12111 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC1.42□□□□□ -2.18
COL6A3P12111 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.42□□□□□ -2.18
COL6A3P12111 AC234775.1-201ENST00000454247 670 ntBASIC1.42□□□□□ -2.18
COL6A3P12111 RPL30P6-201ENST00000475925 342 ntBASIC1.42□□□□□ -2.18
COL6A3P12111 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.42□□□□□ -2.18
COL6A3P12111 Y_RNA.700-201ENST00000516806 100 ntBASIC1.42□□□□□ -2.18
COL6A3P12111 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.42□□□□□ -2.18
COL6A3P12111 AC007375.1-201ENST00000554513 578 ntBASIC1.42□□□□□ -2.18
COL6A3P12111 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.42□□□□□ -2.18
COL6A3P12111 U73023.1-201ENST00000603134 700 ntBASIC1.42□□□□□ -2.18
COL6A3P12111 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
COL6A3P12111 AC111188.2-201ENST00000529697 1387 ntBASIC1.42□□□□□ -2.18
COL6A3P12111 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.41□□□□□ -2.18
COL6A3P12111 RPL19P1-201ENST00000411635 428 ntBASIC1.41□□□□□ -2.18
COL6A3P12111 MTCO1P53-201ENST00000441633 699 ntBASIC1.41□□□□□ -2.18
COL6A3P12111 AC023790.1-201ENST00000482174 347 ntBASIC1.41□□□□□ -2.18
COL6A3P12111 AC006483.1-201ENST00000487308 313 ntBASIC1.41□□□□□ -2.18
COL6A3P12111 DUXAP11-201ENST00000603858 526 ntBASIC1.41□□□□□ -2.18
COL6A3P12111 MTND4P12-201ENST00000498999 1377 ntBASIC1.41□□□□□ -2.18
COL6A3P12111 SNORA40.6-201ENST00000391153 128 ntBASIC1.41□□□□□ -2.18
COL6A3P12111 AC130650.2-201ENST00000618736 2403 ntBASIC1.41□□□□□ -2.18
COL6A3P12111 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.41□□□□□ -2.18
COL6A3P12111 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
COL6A3P12111 AL031659.1-201ENST00000447075 539 ntBASIC1.41□□□□□ -2.18
COL6A3P12111 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC1.41□□□□□ -2.18
COL6A3P12111 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC1.41□□□□□ -2.18
COL6A3P12111 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.41□□□□□ -2.18
COL6A3P12111 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC1.41□□□□□ -2.18
COL6A3P12111 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC1.41□□□□□ -2.18
COL6A3P12111 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC1.41□□□□□ -2.18
COL6A3P12111 MIR924-201ENST00000638017 53 ntBASIC1.41□□□□□ -2.18
COL6A3P12111 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.4□□□□□ -2.18
COL6A3P12111 CNOT6LP1-201ENST00000559681 1462 ntBASIC1.4□□□□□ -2.18
COL6A3P12111 RPL27AP8-201ENST00000424277 446 ntBASIC1.4□□□□□ -2.19
COL6A3P12111 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC1.4□□□□□ -2.19
COL6A3P12111 NDUFS5P3-201ENST00000450668 321 ntBASIC1.4□□□□□ -2.19
COL6A3P12111 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC1.4□□□□□ -2.19
COL6A3P12111 MIR330-201ENST00000362196 94 ntBASIC1.4□□□□□ -2.19
COL6A3P12111 SNORA51.10-201ENST00000384418 136 ntBASIC1.4□□□□□ -2.19
COL6A3P12111 GTF2IP7-202ENST00000436677 309 ntBASIC1.4□□□□□ -2.19
COL6A3P12111 U6.98-201ENST00000637157 84 ntBASIC1.4□□□□□ -2.19
COL6A3P12111 MTND4P31-201ENST00000425607 1343 ntBASIC1.39□□□□□ -2.19
COL6A3P12111 AL359851.1-201ENST00000569460 4997 ntBASIC1.39□□□□□ -2.19
COL6A3P12111 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
COL6A3P12111 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
COL6A3P12111 SNORA18.2-201ENST00000383865 132 ntBASIC1.39□□□□□ -2.19
COL6A3P12111 CYCSP33-201ENST00000414485 327 ntBASIC1.39□□□□□ -2.19
COL6A3P12111 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.39□□□□□ -2.19
COL6A3P12111 OR4K8P-201ENST00000578842 1048 ntBASIC1.39□□□□□ -2.19
COL6A3P12111 AL158032.1-201ENST00000605401 106 ntBASIC1.39□□□□□ -2.19
COL6A3P12111 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.39□□□□□ -2.19
COL6A3P12111 WARS2P1-201ENST00000429678 537 ntBASIC1.39□□□□□ -2.19
COL6A3P12111 AC090774.1-201ENST00000435925 246 ntBASIC1.39□□□□□ -2.19
COL6A3P12111 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms