Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.28□□□□□ -1.88
LMX1BO60663 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.28□□□□□ -1.88
LMX1BO60663 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.28□□□□□ -1.88
LMX1BO60663 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.28□□□□□ -1.88
LMX1BO60663 TPT1P14-201ENST00000448018 505 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.28□□□□□ -1.88
LMX1BO60663 AC104308.1-201ENST00000454621 333 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.28□□□□□ -1.88
LMX1BO60663 RPL21P11-201ENST00000461458 483 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 AC008628.2-201ENST00000502605 298 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 RNF138P1-201ENST00000502765 546 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.28□□□□□ -1.88
LMX1BO60663 AC110768.1-201ENST00000509222 400 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.28□□□□□ -1.88
LMX1BO60663 AC010493.1-201ENST00000513479 292 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC3.28□□□□□ -1.88
LMX1BO60663 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 SNORA70.24-201ENST00000517233 118 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 AC090572.1-201ENST00000519251 160 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 AC022616.3-201ENST00000523940 148 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 AP003072.2-201ENST00000527756 676 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.28□□□□□ -1.88
LMX1BO60663 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
LMX1BO60663 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.28□□□□□ -1.88
LMX1BO60663 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
LMX1BO60663 AC007424.1-203ENST00000554613 687 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 SUB1P2-201ENST00000556401 297 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 MIR4716-201ENST00000579628 84 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 FGF7P1-201ENST00000582820 288 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.28□□□□□ -1.88
LMX1BO60663 MIR4719-201ENST00000585233 84 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.28□□□□□ -1.88
LMX1BO60663 AL356055.1-201ENST00000602528 446 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 AL160281.1-201ENST00000605307 311 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.28□□□□□ -1.88
LMX1BO60663 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.28□□□□□ -1.88
LMX1BO60663 AC093788.1-201ENST00000609356 927 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.28□□□□□ -1.88
LMX1BO60663 AL161734.1-201ENST00000609720 557 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC3.28□□□□□ -1.88
LMX1BO60663 AC096577.2-201ENST00000611455 153 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 AL357559.1-201ENST00000622228 274 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 AP003122.6-201ENST00000623831 495 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
LMX1BO60663 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
LMX1BO60663 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.28□□□□□ -1.88
LMX1BO60663 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
LMX1BO60663 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
LMX1BO60663 AL359893.1-201ENST00000447628 1580 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.28□□□□□ -1.88
LMX1BO60663 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.88
LMX1BO60663 AL354685.2-201ENST00000448218 1447 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.27□□□□□ -1.89
LMX1BO60663 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
LMX1BO60663 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.27□□□□□ -1.89
LMX1BO60663 Y_RNA.813-201ENST00000364639 102 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 RNY4P16-201ENST00000364768 94 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 RNU6-359P-201ENST00000365466 108 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 MIR491-201ENST00000384877 84 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 RPL21P17-201ENST00000397467 475 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.27□□□□□ -1.89
LMX1BO60663 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.27□□□□□ -1.89
LMX1BO60663 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.27□□□□□ -1.89
LMX1BO60663 MTND4LP16-201ENST00000440828 295 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 USP9YP15-201ENST00000442391 422 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 UBE2V1P7-201ENST00000446395 340 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 AL353691.1-201ENST00000451332 387 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 HMGB1P15-201ENST00000453854 435 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 AP000852.1-201ENST00000472460 573 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 AC023194.1-201ENST00000493084 308 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 HMGN1P12-201ENST00000499125 195 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 AC020893.1-201ENST00000502452 580 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.27□□□□□ -1.89
LMX1BO60663 MTCO3P44-201ENST00000510977 541 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 RNU6-835P-201ENST00000516974 104 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC3.27□□□□□ -1.89
LMX1BO60663 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC3.27□□□□□ -1.89
LMX1BO60663 OR4R3P-201ENST00000525084 838 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.27□□□□□ -1.89
LMX1BO60663 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.27□□□□□ -1.89
LMX1BO60663 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC3.27□□□□□ -1.89
LMX1BO60663 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
LMX1BO60663 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.27□□□□□ -1.89
LMX1BO60663 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.27□□□□□ -1.89
LMX1BO60663 AC024224.1-201ENST00000538284 609 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 AC008011.1-201ENST00000545989 227 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.27□□□□□ -1.89
LMX1BO60663 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC3.27□□□□□ -1.89
LMX1BO60663 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC3.27□□□□□ -1.89
LMX1BO60663 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.27□□□□□ -1.89
LMX1BO60663 AC012507.3-201ENST00000603556 477 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 AC025449.1-201ENST00000603896 529 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 AL136363.1-201ENST00000605349 337 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 SNORA62.6-201ENST00000606322 83 ntBASIC3.27□□□□□ -1.89
LMX1BO60663 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
LMX1BO60663 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.27□□□□□ -1.89
LMX1BO60663 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.27□□□□□ -1.89
LMX1BO60663 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
LMX1BO60663 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.27□□□□□ -1.89
LMX1BO60663 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms